Results 1 - 20 of 590 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28947 | 5' | -53 | NC_006146.1 | + | 378 | 0.67 | 0.973686 |
Target: 5'- gCCGcGCCcccucAGGCCCCGcccgccgcgcGCUGGGGGuCCg -3' miRNA: 3'- -GGC-CGG-----UCCGGGGUau--------UGAUUUCU-GG- -5' |
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28947 | 5' | -53 | NC_006146.1 | + | 476 | 0.73 | 0.782924 |
Target: 5'- aCGcGCCGGGCCCC---GCg--GGACCc -3' miRNA: 3'- gGC-CGGUCCGGGGuauUGauuUCUGG- -5' |
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28947 | 5' | -53 | NC_006146.1 | + | 709 | 0.68 | 0.945408 |
Target: 5'- cCCcGCCAGGCCCCGgccccgccCUcgGGAgCCc -3' miRNA: 3'- -GGcCGGUCCGGGGUauu-----GAuuUCU-GG- -5' |
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28947 | 5' | -53 | NC_006146.1 | + | 832 | 0.69 | 0.936044 |
Target: 5'- gCCGGCCAuccccacgcgcGGCCCCGggccCUccccgacauccAGGGACUg -3' miRNA: 3'- -GGCCGGU-----------CCGGGGUauu-GA-----------UUUCUGG- -5' |
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28947 | 5' | -53 | NC_006146.1 | + | 1309 | 0.66 | 0.982899 |
Target: 5'- gCCGcGCCcccucAGGCCCCAcccGACgcgcgcucGGGCCc -3' miRNA: 3'- -GGC-CGG-----UCCGGGGUa--UUGauu-----UCUGG- -5' |
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28947 | 5' | -53 | NC_006146.1 | + | 1407 | 0.73 | 0.782924 |
Target: 5'- aCGcGCCGGGCCCC---GCg--GGACCc -3' miRNA: 3'- gGC-CGGUCCGGGGuauUGauuUCUGG- -5' |
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28947 | 5' | -53 | NC_006146.1 | + | 1640 | 0.68 | 0.945408 |
Target: 5'- cCCcGCCAGGCCCCGgccccgccCUcgGGAgCCc -3' miRNA: 3'- -GGcCGGUCCGGGGUauu-----GAuuUCU-GG- -5' |
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28947 | 5' | -53 | NC_006146.1 | + | 1764 | 0.69 | 0.936044 |
Target: 5'- gCCGGCCAuccccacgcgcGGCCCCGggccCUccccgacauccAGGGACUg -3' miRNA: 3'- -GGCCGGU-----------CCGGGGUauu-GA-----------UUUCUGG- -5' |
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28947 | 5' | -53 | NC_006146.1 | + | 2241 | 0.66 | 0.982899 |
Target: 5'- gCCGcGCCcccucAGGCCCCAcccGACgcgcgcucGGGCCc -3' miRNA: 3'- -GGC-CGG-----UCCGGGGUa--UUGauu-----UCUGG- -5' |
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28947 | 5' | -53 | NC_006146.1 | + | 2293 | 0.66 | 0.978659 |
Target: 5'- aCCGgaGCCAGGCCCUccuuccGACaguuccAGGCCa -3' miRNA: 3'- -GGC--CGGUCCGGGGua----UUGauu---UCUGG- -5' |
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28947 | 5' | -53 | NC_006146.1 | + | 2339 | 0.73 | 0.782924 |
Target: 5'- aCGcGCCGGGCCCC---GCg--GGACCc -3' miRNA: 3'- gGC-CGGUCCGGGGuauUGauuUCUGG- -5' |
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28947 | 5' | -53 | NC_006146.1 | + | 2572 | 0.68 | 0.945408 |
Target: 5'- cCCcGCCAGGCCCCGgccccgccCUcgGGAgCCc -3' miRNA: 3'- -GGcCGGUCCGGGGUauu-----GAuuUCU-GG- -5' |
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28947 | 5' | -53 | NC_006146.1 | + | 2696 | 0.69 | 0.936044 |
Target: 5'- gCCGGCCAuccccacgcgcGGCCCCGggccCUccccgacauccAGGGACUg -3' miRNA: 3'- -GGCCGGU-----------CCGGGGUauu-GA-----------UUUCUGG- -5' |
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28947 | 5' | -53 | NC_006146.1 | + | 2757 | 0.67 | 0.973686 |
Target: 5'- cCCGGCCcucgcAGGCCCaagcccgGAUgucaggGAAGACg -3' miRNA: 3'- -GGCCGG-----UCCGGGgua----UUGa-----UUUCUGg -5' |
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28947 | 5' | -53 | NC_006146.1 | + | 3173 | 0.66 | 0.982899 |
Target: 5'- gCCGcGCCcccucAGGCCCCAcccGACgcgcgcucGGGCCc -3' miRNA: 3'- -GGC-CGG-----UCCGGGGUa--UUGauu-----UCUGG- -5' |
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28947 | 5' | -53 | NC_006146.1 | + | 3271 | 0.73 | 0.782924 |
Target: 5'- aCGcGCCGGGCCCC---GCg--GGACCc -3' miRNA: 3'- gGC-CGGUCCGGGGuauUGauuUCUGG- -5' |
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28947 | 5' | -53 | NC_006146.1 | + | 3504 | 0.68 | 0.945408 |
Target: 5'- cCCcGCCAGGCCCCGgccccgccCUcgGGAgCCc -3' miRNA: 3'- -GGcCGGUCCGGGGUauu-----GAuuUCU-GG- -5' |
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28947 | 5' | -53 | NC_006146.1 | + | 3628 | 0.69 | 0.936044 |
Target: 5'- gCCGGCCAuccccacgcgcGGCCCCGggccCUccccgacauccAGGGACUg -3' miRNA: 3'- -GGCCGGU-----------CCGGGGUauu-GA-----------UUUCUGG- -5' |
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28947 | 5' | -53 | NC_006146.1 | + | 3890 | 0.71 | 0.867464 |
Target: 5'- cUCGGCgAGGCCCaccGAC--GAGGCCc -3' miRNA: 3'- -GGCCGgUCCGGGguaUUGauUUCUGG- -5' |
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28947 | 5' | -53 | NC_006146.1 | + | 4367 | 0.77 | 0.561845 |
Target: 5'- gUGGCCAcGGCCCCGcgGGCUccccAGGCCg -3' miRNA: 3'- gGCCGGU-CCGGGGUa-UUGAuu--UCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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