Results 1 - 20 of 98 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28948 | 3' | -63 | NC_006146.1 | + | 12999 | 1.1 | 0.000767 |
Target: 5'- gGGGAGUGGAGGGGGAUCGCCCGGGUCu -3' miRNA: 3'- -CCCUCACCUCCCCCUAGCGGGCCCAG- -5' |
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28948 | 3' | -63 | NC_006146.1 | + | 28389 | 1.1 | 0.000767 |
Target: 5'- gGGGAGUGGAGGGGGAUCGCCCGGGUCu -3' miRNA: 3'- -CCCUCACCUCCCCCUAGCGGGCCCAG- -5' |
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28948 | 3' | -63 | NC_006146.1 | + | 25311 | 1.1 | 0.000767 |
Target: 5'- gGGGAGUGGAGGGGGAUCGCCCGGGUCu -3' miRNA: 3'- -CCCUCACCUCCCCCUAGCGGGCCCAG- -5' |
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28948 | 3' | -63 | NC_006146.1 | + | 22233 | 1.1 | 0.000767 |
Target: 5'- gGGGAGUGGAGGGGGAUCGCCCGGGUCu -3' miRNA: 3'- -CCCUCACCUCCCCCUAGCGGGCCCAG- -5' |
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28948 | 3' | -63 | NC_006146.1 | + | 19155 | 1.1 | 0.000767 |
Target: 5'- gGGGAGUGGAGGGGGAUCGCCCGGGUCu -3' miRNA: 3'- -CCCUCACCUCCCCCUAGCGGGCCCAG- -5' |
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28948 | 3' | -63 | NC_006146.1 | + | 16077 | 1.1 | 0.000767 |
Target: 5'- gGGGAGUGGAGGGGGAUCGCCCGGGUCu -3' miRNA: 3'- -CCCUCACCUCCCCCUAGCGGGCCCAG- -5' |
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28948 | 3' | -63 | NC_006146.1 | + | 48213 | 0.76 | 0.191097 |
Target: 5'- gGGGAcUGGAGGGccuGGcgCGCCUGGGUg -3' miRNA: 3'- -CCCUcACCUCCC---CCuaGCGGGCCCAg -5' |
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28948 | 3' | -63 | NC_006146.1 | + | 33644 | 0.75 | 0.200254 |
Target: 5'- cGGGGGUGGGGGaGGGAgggguguggUC-CCCGGGa- -3' miRNA: 3'- -CCCUCACCUCC-CCCU---------AGcGGGCCCag -5' |
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28948 | 3' | -63 | NC_006146.1 | + | 51831 | 0.74 | 0.233752 |
Target: 5'- cGGGGcggcGUGGAGGGGGGcUCggggccuggcccgaGCCCGGGg- -3' miRNA: 3'- -CCCU----CACCUCCCCCU-AG--------------CGGGCCCag -5' |
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28948 | 3' | -63 | NC_006146.1 | + | 137391 | 0.73 | 0.269429 |
Target: 5'- aGGGAG-GGAGGccGGGAgggUGCUgGGGUCc -3' miRNA: 3'- -CCCUCaCCUCC--CCCUa--GCGGgCCCAG- -5' |
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28948 | 3' | -63 | NC_006146.1 | + | 43628 | 0.73 | 0.287906 |
Target: 5'- aGGGAGUGGGcGGcGGGGcguggcCGCCUGGGg- -3' miRNA: 3'- -CCCUCACCU-CC-CCCUa-----GCGGGCCCag -5' |
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28948 | 3' | -63 | NC_006146.1 | + | 127097 | 0.73 | 0.30077 |
Target: 5'- aGGGAgGUGGugucAGGGGGGUcgaCGCCCGGa-- -3' miRNA: 3'- -CCCU-CACC----UCCCCCUA---GCGGGCCcag -5' |
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28948 | 3' | -63 | NC_006146.1 | + | 161748 | 0.72 | 0.306702 |
Target: 5'- cGGGGGUGGcggcugagguccgAGGGGG--CGCCUGGG-Cg -3' miRNA: 3'- -CCCUCACC-------------UCCCCCuaGCGGGCCCaG- -5' |
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28948 | 3' | -63 | NC_006146.1 | + | 48011 | 0.72 | 0.335562 |
Target: 5'- cGGGAGgcuUGGcGGGGGAggcacggcgggccgGCUCGGGUCg -3' miRNA: 3'- -CCCUC---ACCuCCCCCUag------------CGGGCCCAG- -5' |
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28948 | 3' | -63 | NC_006146.1 | + | 167619 | 0.71 | 0.349255 |
Target: 5'- cGGGGGcGGAGGGGGGggUC-CCgCGGGg- -3' miRNA: 3'- -CCCUCaCCUCCCCCU--AGcGG-GCCCag -5' |
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28948 | 3' | -63 | NC_006146.1 | + | 170414 | 0.71 | 0.349255 |
Target: 5'- cGGGGGcGGAGGGGGGggUC-CCgCGGGg- -3' miRNA: 3'- -CCCUCaCCUCCCCCU--AGcGG-GCCCag -5' |
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28948 | 3' | -63 | NC_006146.1 | + | 169483 | 0.71 | 0.349255 |
Target: 5'- cGGGGGcGGAGGGGGGggUC-CCgCGGGg- -3' miRNA: 3'- -CCCUCaCCUCCCCCU--AGcGG-GCCCag -5' |
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28948 | 3' | -63 | NC_006146.1 | + | 168551 | 0.71 | 0.349255 |
Target: 5'- cGGGGGcGGAGGGGGGggUC-CCgCGGGg- -3' miRNA: 3'- -CCCUCaCCUCCCCCU--AGcGG-GCCCag -5' |
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28948 | 3' | -63 | NC_006146.1 | + | 141592 | 0.71 | 0.371675 |
Target: 5'- aGGGAGagaGGAGGGGGAggcgggcgcccUUGCCUGGa-- -3' miRNA: 3'- -CCCUCa--CCUCCCCCU-----------AGCGGGCCcag -5' |
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28948 | 3' | -63 | NC_006146.1 | + | 144670 | 0.71 | 0.371675 |
Target: 5'- aGGGAGagaGGAGGGGGAggcgggcgcccUUGCCUGGa-- -3' miRNA: 3'- -CCCUCa--CCUCCCCCU-----------AGCGGGCCcag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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