Results 21 - 40 of 98 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28948 | 3' | -63 | NC_006146.1 | + | 141592 | 0.71 | 0.371675 |
Target: 5'- aGGGAGagaGGAGGGGGAggcgggcgcccUUGCCUGGa-- -3' miRNA: 3'- -CCCUCa--CCUCCCCCU-----------AGCGGGCCcag -5' |
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28948 | 3' | -63 | NC_006146.1 | + | 156981 | 0.71 | 0.371675 |
Target: 5'- aGGGAGagaGGAGGGGGAggcgggcgcccUUGCCUGGa-- -3' miRNA: 3'- -CCCUCa--CCUCCCCCU-----------AGCGGGCCcag -5' |
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28948 | 3' | -63 | NC_006146.1 | + | 144670 | 0.71 | 0.371675 |
Target: 5'- aGGGAGagaGGAGGGGGAggcgggcgcccUUGCCUGGa-- -3' miRNA: 3'- -CCCUCa--CCUCCCCCU-----------AGCGGGCCcag -5' |
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28948 | 3' | -63 | NC_006146.1 | + | 147747 | 0.71 | 0.371675 |
Target: 5'- aGGGAGagaGGAGGGGGAggcgggcgcccUUGCCUGGa-- -3' miRNA: 3'- -CCCUCa--CCUCCCCCU-----------AGCGGGCCcag -5' |
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28948 | 3' | -63 | NC_006146.1 | + | 33209 | 0.71 | 0.377817 |
Target: 5'- gGGGAGgccGGAGGGGGAgccgggaugggGCUgGGGUUc -3' miRNA: 3'- -CCCUCa--CCUCCCCCUag---------CGGgCCCAG- -5' |
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28948 | 3' | -63 | NC_006146.1 | + | 3784 | 0.71 | 0.379363 |
Target: 5'- gGGGGGgggGGGGGGGGGggGCaCgCGGGg- -3' miRNA: 3'- -CCCUCa--CCUCCCCCUagCG-G-GCCCag -5' |
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28948 | 3' | -63 | NC_006146.1 | + | 33398 | 0.7 | 0.403057 |
Target: 5'- -cGGGUGGGGGGuGGccCGCCUGGG-Ca -3' miRNA: 3'- ccCUCACCUCCC-CCuaGCGGGCCCaG- -5' |
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28948 | 3' | -63 | NC_006146.1 | + | 150684 | 0.7 | 0.403057 |
Target: 5'- gGGGAGUGGccAGGGGGAcggagggccUgGCCUGcGGg- -3' miRNA: 3'- -CCCUCACC--UCCCCCU---------AgCGGGC-CCag -5' |
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28948 | 3' | -63 | NC_006146.1 | + | 140127 | 0.7 | 0.411161 |
Target: 5'- aGGGGGUGGcggaggugguGGcGGGGGUgC-CCCGGGUa -3' miRNA: 3'- -CCCUCACC----------UC-CCCCUA-GcGGGCCCAg -5' |
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28948 | 3' | -63 | NC_006146.1 | + | 167331 | 0.7 | 0.41854 |
Target: 5'- -uGAGUGGAcGGGGGAuuucauuUCGCCCucuGGGa- -3' miRNA: 3'- ccCUCACCU-CCCCCU-------AGCGGG---CCCag -5' |
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28948 | 3' | -63 | NC_006146.1 | + | 3839 | 0.7 | 0.419365 |
Target: 5'- uGGAGccggcgGGuaAGGGGGGUCGCCCuGGa- -3' miRNA: 3'- cCCUCa-----CC--UCCCCCUAGCGGGcCCag -5' |
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28948 | 3' | -63 | NC_006146.1 | + | 33474 | 0.7 | 0.426833 |
Target: 5'- uGGGGGUcgggaagGGAGGGGcguGGUC-CCCGGGa- -3' miRNA: 3'- -CCCUCA-------CCUCCCC---CUAGcGGGCCCag -5' |
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28948 | 3' | -63 | NC_006146.1 | + | 33831 | 0.7 | 0.427668 |
Target: 5'- cGGGGGUGGGGGaGGGAgggguguggUC-CCCGGa-- -3' miRNA: 3'- -CCCUCACCUCC-CCCU---------AGcGGGCCcag -5' |
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28948 | 3' | -63 | NC_006146.1 | + | 144300 | 0.7 | 0.443707 |
Target: 5'- cGGAuGUGGGguGGGGGAUCuauccguGCCC-GGUCa -3' miRNA: 3'- cCCU-CACCU--CCCCCUAG-------CGGGcCCAG- -5' |
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28948 | 3' | -63 | NC_006146.1 | + | 154175 | 0.7 | 0.444561 |
Target: 5'- gGGGAGgagGGAGGGGaGAggcUGCUgGGGa- -3' miRNA: 3'- -CCCUCa--CCUCCCC-CUa--GCGGgCCCag -5' |
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28948 | 3' | -63 | NC_006146.1 | + | 141863 | 0.7 | 0.444561 |
Target: 5'- gGGGAGgagGGAGGGGaGAggcUGCUgGGGa- -3' miRNA: 3'- -CCCUCa--CCUCCCC-CUa--GCGGgCCCag -5' |
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28948 | 3' | -63 | NC_006146.1 | + | 157253 | 0.7 | 0.444561 |
Target: 5'- gGGGAGgagGGAGGGGaGAggcUGCUgGGGa- -3' miRNA: 3'- -CCCUCa--CCUCCCC-CUa--GCGGgCCCag -5' |
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28948 | 3' | -63 | NC_006146.1 | + | 148019 | 0.7 | 0.444561 |
Target: 5'- gGGGAGgagGGAGGGGaGAggcUGCUgGGGa- -3' miRNA: 3'- -CCCUCa--CCUCCCC-CUa--GCGGgCCCag -5' |
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28948 | 3' | -63 | NC_006146.1 | + | 144941 | 0.7 | 0.444561 |
Target: 5'- gGGGAGgagGGAGGGGaGAggcUGCUgGGGa- -3' miRNA: 3'- -CCCUCa--CCUCCCC-CUa--GCGGgCCCag -5' |
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28948 | 3' | -63 | NC_006146.1 | + | 151097 | 0.7 | 0.444561 |
Target: 5'- gGGGAGgagGGAGGGGaGAggcUGCUgGGGa- -3' miRNA: 3'- -CCCUCa--CCUCCCC-CUa--GCGGgCCCag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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