miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28948 3' -63 NC_006146.1 + 10 0.66 0.63877
Target:  5'- aGGGG-GGAGGGGGGgUUGaggggCCGGGa- -3'
miRNA:   3'- cCCUCaCCUCCCCCU-AGCg----GGCCCag -5'
28948 3' -63 NC_006146.1 + 3784 0.71 0.379363
Target:  5'- gGGGGGgggGGGGGGGGGggGCaCgCGGGg- -3'
miRNA:   3'- -CCCUCa--CCUCCCCCUagCG-G-GCCCag -5'
28948 3' -63 NC_006146.1 + 3839 0.7 0.419365
Target:  5'- uGGAGccggcgGGuaAGGGGGGUCGCCCuGGa- -3'
miRNA:   3'- cCCUCa-----CC--UCCCCCUAGCGGGcCCag -5'
28948 3' -63 NC_006146.1 + 12999 1.1 0.000767
Target:  5'- gGGGAGUGGAGGGGGAUCGCCCGGGUCu -3'
miRNA:   3'- -CCCUCACCUCCCCCUAGCGGGCCCAG- -5'
28948 3' -63 NC_006146.1 + 13926 0.68 0.543403
Target:  5'- aGGAGUGGcGGGuGG---GCCCGGGg- -3'
miRNA:   3'- cCCUCACCuCCC-CCuagCGGGCCCag -5'
28948 3' -63 NC_006146.1 + 14856 0.66 0.677131
Target:  5'- cGGGAGgccGAGGGGGca-GCCaGGGa- -3'
miRNA:   3'- -CCCUCac-CUCCCCCuagCGGgCCCag -5'
28948 3' -63 NC_006146.1 + 16077 1.1 0.000767
Target:  5'- gGGGAGUGGAGGGGGAUCGCCCGGGUCu -3'
miRNA:   3'- -CCCUCACCUCCCCCUAGCGGGCCCAG- -5'
28948 3' -63 NC_006146.1 + 19155 1.1 0.000767
Target:  5'- gGGGAGUGGAGGGGGAUCGCCCGGGUCu -3'
miRNA:   3'- -CCCUCACCUCCCCCUAGCGGGCCCAG- -5'
28948 3' -63 NC_006146.1 + 22233 1.1 0.000767
Target:  5'- gGGGAGUGGAGGGGGAUCGCCCGGGUCu -3'
miRNA:   3'- -CCCUCACCUCCCCCUAGCGGGCCCAG- -5'
28948 3' -63 NC_006146.1 + 25311 1.1 0.000767
Target:  5'- gGGGAGUGGAGGGGGAUCGCCCGGGUCu -3'
miRNA:   3'- -CCCUCACCUCCCCCUAGCGGGCCCAG- -5'
28948 3' -63 NC_006146.1 + 26185 0.68 0.524795
Target:  5'- gGGGAuuagGUcGGAGGGGGcg-GCCUGGGa- -3'
miRNA:   3'- -CCCU----CA-CCUCCCCCuagCGGGCCCag -5'
28948 3' -63 NC_006146.1 + 28389 1.1 0.000767
Target:  5'- gGGGAGUGGAGGGGGAUCGCCCGGGUCu -3'
miRNA:   3'- -CCCUCACCUCCCCCUAGCGGGCCCAG- -5'
28948 3' -63 NC_006146.1 + 33209 0.71 0.377817
Target:  5'- gGGGAGgccGGAGGGGGAgccgggaugggGCUgGGGUUc -3'
miRNA:   3'- -CCCUCa--CCUCCCCCUag---------CGGgCCCAG- -5'
28948 3' -63 NC_006146.1 + 33398 0.7 0.403057
Target:  5'- -cGGGUGGGGGGuGGccCGCCUGGG-Ca -3'
miRNA:   3'- ccCUCACCUCCC-CCuaGCGGGCCCaG- -5'
28948 3' -63 NC_006146.1 + 33474 0.7 0.426833
Target:  5'- uGGGGGUcgggaagGGAGGGGcguGGUC-CCCGGGa- -3'
miRNA:   3'- -CCCUCA-------CCUCCCC---CUAGcGGGCCCag -5'
28948 3' -63 NC_006146.1 + 33644 0.75 0.200254
Target:  5'- cGGGGGUGGGGGaGGGAgggguguggUC-CCCGGGa- -3'
miRNA:   3'- -CCCUCACCUCC-CCCU---------AGcGGGCCCag -5'
28948 3' -63 NC_006146.1 + 33831 0.7 0.427668
Target:  5'- cGGGGGUGGGGGaGGGAgggguguggUC-CCCGGa-- -3'
miRNA:   3'- -CCCUCACCUCC-CCCU---------AGcGGGCCcag -5'
28948 3' -63 NC_006146.1 + 35887 0.67 0.590758
Target:  5'- uGGGGGUGGuGGGGuGA-CGCggaccaCGGGa- -3'
miRNA:   3'- -CCCUCACCuCCCC-CUaGCGg-----GCCCag -5'
28948 3' -63 NC_006146.1 + 36109 0.66 0.667572
Target:  5'- aGGGGGacccgcugcUGGGuGGGGGuuGUgGCCUGGG-Ca -3'
miRNA:   3'- -CCCUC---------ACCU-CCCCC--UAgCGGGCCCaG- -5'
28948 3' -63 NC_006146.1 + 43590 0.69 0.479428
Target:  5'- gGGGAGcGGGGcGGGA--GgCCGGGUCg -3'
miRNA:   3'- -CCCUCaCCUCcCCCUagCgGGCCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.