miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28948 3' -63 NC_006146.1 + 43628 0.73 0.287906
Target:  5'- aGGGAGUGGGcGGcGGGGcguggcCGCCUGGGg- -3'
miRNA:   3'- -CCCUCACCU-CC-CCCUa-----GCGGGCCCag -5'
28948 3' -63 NC_006146.1 + 44637 0.67 0.587892
Target:  5'- uGGAGcUGGAGaGGcgucucccaagcccGGG-CGCCUGGGUCc -3'
miRNA:   3'- cCCUC-ACCUC-CC--------------CCUaGCGGGCCCAG- -5'
28948 3' -63 NC_006146.1 + 47702 0.69 0.488354
Target:  5'- uGGGcGUGGAagagGuGGGGAgcagCGCCCGGagcucGUCg -3'
miRNA:   3'- -CCCuCACCU----C-CCCCUa---GCGGGCC-----CAG- -5'
28948 3' -63 NC_006146.1 + 47735 0.67 0.609925
Target:  5'- gGGGAGgucuUGGAGGGGc-UgGCCCuGGGg- -3'
miRNA:   3'- -CCCUC----ACCUCCCCcuAgCGGG-CCCag -5'
28948 3' -63 NC_006146.1 + 48011 0.72 0.335562
Target:  5'- cGGGAGgcuUGGcGGGGGAggcacggcgggccgGCUCGGGUCg -3'
miRNA:   3'- -CCCUC---ACCuCCCCCUag------------CGGGCCCAG- -5'
28948 3' -63 NC_006146.1 + 48213 0.76 0.191097
Target:  5'- gGGGAcUGGAGGGccuGGcgCGCCUGGGUg -3'
miRNA:   3'- -CCCUcACCUCCC---CCuaGCGGGCCCAg -5'
28948 3' -63 NC_006146.1 + 51831 0.74 0.233752
Target:  5'- cGGGGcggcGUGGAGGGGGGcUCggggccuggcccgaGCCCGGGg- -3'
miRNA:   3'- -CCCU----CACCUCCCCCU-AG--------------CGGGCCCag -5'
28948 3' -63 NC_006146.1 + 55024 0.66 0.677131
Target:  5'- uGGGGGcgggcgGGAuGGGGGUCGgggCCGGGg- -3'
miRNA:   3'- -CCCUCa-----CCUcCCCCUAGCg--GGCCCag -5'
28948 3' -63 NC_006146.1 + 56247 0.66 0.657987
Target:  5'- cGGGGGcGGAGGcGGGGcCGUCCucggcGGGg- -3'
miRNA:   3'- -CCCUCaCCUCC-CCCUaGCGGG-----CCCag -5'
28948 3' -63 NC_006146.1 + 60135 0.66 0.619534
Target:  5'- gGGGAGggaccUGGuGGGGGGUgugUGCCaGGGg- -3'
miRNA:   3'- -CCCUC-----ACCuCCCCCUA---GCGGgCCCag -5'
28948 3' -63 NC_006146.1 + 66986 0.67 0.599373
Target:  5'- uGGGAaaaGUaGGAuGGGGuguaggaGAUgGCCCGGGUg -3'
miRNA:   3'- -CCCU---CA-CCU-CCCC-------CUAgCGGGCCCAg -5'
28948 3' -63 NC_006146.1 + 68399 0.68 0.505524
Target:  5'- cGGGGGUGGAcauuauuuaagacGGGGaGcgCGCCUaugggGGGUa -3'
miRNA:   3'- -CCCUCACCU-------------CCCC-CuaGCGGG-----CCCAg -5'
28948 3' -63 NC_006146.1 + 70967 0.68 0.53407
Target:  5'- aGGAGgcgGGAGcGGGGGUgCGaCCCGGa-- -3'
miRNA:   3'- cCCUCa--CCUC-CCCCUA-GC-GGGCCcag -5'
28948 3' -63 NC_006146.1 + 109845 0.66 0.63877
Target:  5'- gGGGGGUGGugugccauAGaGGGGAgggagaccgauaUCGCCCaGGa- -3'
miRNA:   3'- -CCCUCACC--------UC-CCCCU------------AGCGGGcCCag -5'
28948 3' -63 NC_006146.1 + 112111 0.67 0.608965
Target:  5'- cGGGGGUGGAGGuGGugcugguGGUgGCCUcGGUg -3'
miRNA:   3'- -CCCUCACCUCC-CC-------CUAgCGGGcCCAg -5'
28948 3' -63 NC_006146.1 + 113966 0.68 0.524795
Target:  5'- uGGAa--GAGGGGGGU-GCCCGGGg- -3'
miRNA:   3'- cCCUcacCUCCCCCUAgCGGGCCCag -5'
28948 3' -63 NC_006146.1 + 127097 0.73 0.30077
Target:  5'- aGGGAgGUGGugucAGGGGGGUcgaCGCCCGGa-- -3'
miRNA:   3'- -CCCU-CACC----UCCCCCUA---GCGGGCCcag -5'
28948 3' -63 NC_006146.1 + 127965 0.66 0.619534
Target:  5'- cGGAGggcagGGAccGGGaccuaguguaccGGAUCGCcaaCCGGGUCu -3'
miRNA:   3'- cCCUCa----CCU--CCC------------CCUAGCG---GGCCCAG- -5'
28948 3' -63 NC_006146.1 + 129270 0.67 0.562221
Target:  5'- aGGGAuGUGGGGcuGGucugCGCCCGGGcCc -3'
miRNA:   3'- -CCCU-CACCUCccCCua--GCGGGCCCaG- -5'
28948 3' -63 NC_006146.1 + 132945 0.67 0.590758
Target:  5'- cGGAG-GGGGGGGGugguggauuAUC-UCUGGGUCc -3'
miRNA:   3'- cCCUCaCCUCCCCC---------UAGcGGGCCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.