miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28948 3' -63 NC_006146.1 + 170414 0.71 0.349255
Target:  5'- cGGGGGcGGAGGGGGGggUC-CCgCGGGg- -3'
miRNA:   3'- -CCCUCaCCUCCCCCU--AGcGG-GCCCag -5'
28948 3' -63 NC_006146.1 + 169972 0.68 0.524795
Target:  5'- cGGGAcgGGAGGccGGcGcgCGCCCGGGg- -3'
miRNA:   3'- -CCCUcaCCUCC--CC-CuaGCGGGCCCag -5'
28948 3' -63 NC_006146.1 + 169483 0.71 0.349255
Target:  5'- cGGGGGcGGAGGGGGGggUC-CCgCGGGg- -3'
miRNA:   3'- -CCCUCaCCUCCCCCU--AGcGG-GCCCag -5'
28948 3' -63 NC_006146.1 + 169040 0.68 0.524795
Target:  5'- cGGGAcgGGAGGccGGcGcgCGCCCGGGg- -3'
miRNA:   3'- -CCCUcaCCUCC--CC-CuaGCGGGCCCag -5'
28948 3' -63 NC_006146.1 + 168551 0.71 0.349255
Target:  5'- cGGGGGcGGAGGGGGGggUC-CCgCGGGg- -3'
miRNA:   3'- -CCCUCaCCUCCCCCU--AGcGG-GCCCag -5'
28948 3' -63 NC_006146.1 + 168108 0.68 0.524795
Target:  5'- cGGGAcgGGAGGccGGcGcgCGCCCGGGg- -3'
miRNA:   3'- -CCCUcaCCUCC--CC-CuaGCGGGCCCag -5'
28948 3' -63 NC_006146.1 + 167619 0.71 0.349255
Target:  5'- cGGGGGcGGAGGGGGGggUC-CCgCGGGg- -3'
miRNA:   3'- -CCCUCaCCUCCCCCU--AGcGG-GCCCag -5'
28948 3' -63 NC_006146.1 + 167331 0.7 0.41854
Target:  5'- -uGAGUGGAcGGGGGAuuucauuUCGCCCucuGGGa- -3'
miRNA:   3'- ccCUCACCU-CCCCCU-------AGCGGG---CCCag -5'
28948 3' -63 NC_006146.1 + 167176 0.68 0.524795
Target:  5'- cGGGAcgGGAGGccGGcGcgCGCCCGGGg- -3'
miRNA:   3'- -CCCUcaCCUCC--CC-CuaGCGGGCCCag -5'
28948 3' -63 NC_006146.1 + 166132 0.67 0.571698
Target:  5'- aGGGAGgagacGGAGGGGGAggGaCuCUGGGc- -3'
miRNA:   3'- -CCCUCa----CCUCCCCCUagC-G-GGCCCag -5'
28948 3' -63 NC_006146.1 + 165746 0.69 0.488354
Target:  5'- cGGGGGUcagGGAGGGGGAUgGgaauaUGGGUa -3'
miRNA:   3'- -CCCUCA---CCUCCCCCUAgCgg---GCCCAg -5'
28948 3' -63 NC_006146.1 + 161748 0.72 0.306702
Target:  5'- cGGGGGUGGcggcugagguccgAGGGGG--CGCCUGGG-Cg -3'
miRNA:   3'- -CCCUCACC-------------UCCCCCuaGCGGGCCCaG- -5'
28948 3' -63 NC_006146.1 + 157614 0.66 0.619534
Target:  5'- uGGGGGUaGucgcGGGcGGGcacCGCCUGGGUCu -3'
miRNA:   3'- -CCCUCAcCu---CCC-CCUa--GCGGGCCCAG- -5'
28948 3' -63 NC_006146.1 + 157253 0.7 0.444561
Target:  5'- gGGGAGgagGGAGGGGaGAggcUGCUgGGGa- -3'
miRNA:   3'- -CCCUCa--CCUCCCC-CUa--GCGGgCCCag -5'
28948 3' -63 NC_006146.1 + 156981 0.71 0.371675
Target:  5'- aGGGAGagaGGAGGGGGAggcgggcgcccUUGCCUGGa-- -3'
miRNA:   3'- -CCCUCa--CCUCCCCCU-----------AGCGGGCCcag -5'
28948 3' -63 NC_006146.1 + 154175 0.7 0.444561
Target:  5'- gGGGAGgagGGAGGGGaGAggcUGCUgGGGa- -3'
miRNA:   3'- -CCCUCa--CCUCCCC-CUa--GCGGgCCCag -5'
28948 3' -63 NC_006146.1 + 153903 0.71 0.371675
Target:  5'- aGGGAGagaGGAGGGGGAggcgggcgcccUUGCCUGGa-- -3'
miRNA:   3'- -CCCUCa--CCUCCCCCU-----------AGCGGGCCcag -5'
28948 3' -63 NC_006146.1 + 153530 0.68 0.543403
Target:  5'- uGGAGUGGGGGgcguGGGGcUGCuuGGGa- -3'
miRNA:   3'- cCCUCACCUCC----CCCUaGCGggCCCag -5'
28948 3' -63 NC_006146.1 + 151097 0.7 0.444561
Target:  5'- gGGGAGgagGGAGGGGaGAggcUGCUgGGGa- -3'
miRNA:   3'- -CCCUCa--CCUCCCC-CUa--GCGGgCCCag -5'
28948 3' -63 NC_006146.1 + 150825 0.71 0.371675
Target:  5'- aGGGAGagaGGAGGGGGAggcgggcgcccUUGCCUGGa-- -3'
miRNA:   3'- -CCCUCa--CCUCCCCCU-----------AGCGGGCCcag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.