miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28948 3' -63 NC_006146.1 + 137391 0.73 0.269429
Target:  5'- aGGGAG-GGAGGccGGGAgggUGCUgGGGUCc -3'
miRNA:   3'- -CCCUCaCCUCC--CCCUa--GCGGgCCCAG- -5'
28948 3' -63 NC_006146.1 + 144941 0.7 0.444561
Target:  5'- gGGGAGgagGGAGGGGaGAggcUGCUgGGGa- -3'
miRNA:   3'- -CCCUCa--CCUCCCC-CUa--GCGGgCCCag -5'
28948 3' -63 NC_006146.1 + 151097 0.7 0.444561
Target:  5'- gGGGAGgagGGAGGGGaGAggcUGCUgGGGa- -3'
miRNA:   3'- -CCCUCa--CCUCCCC-CUa--GCGGgCCCag -5'
28948 3' -63 NC_006146.1 + 14856 0.66 0.677131
Target:  5'- cGGGAGgccGAGGGGGca-GCCaGGGa- -3'
miRNA:   3'- -CCCUCac-CUCCCCCuagCGGgCCCag -5'
28948 3' -63 NC_006146.1 + 141592 0.71 0.371675
Target:  5'- aGGGAGagaGGAGGGGGAggcgggcgcccUUGCCUGGa-- -3'
miRNA:   3'- -CCCUCa--CCUCCCCCU-----------AGCGGGCCcag -5'
28948 3' -63 NC_006146.1 + 144670 0.71 0.371675
Target:  5'- aGGGAGagaGGAGGGGGAggcgggcgcccUUGCCUGGa-- -3'
miRNA:   3'- -CCCUCa--CCUCCCCCU-----------AGCGGGCCcag -5'
28948 3' -63 NC_006146.1 + 150825 0.71 0.371675
Target:  5'- aGGGAGagaGGAGGGGGAggcgggcgcccUUGCCUGGa-- -3'
miRNA:   3'- -CCCUCa--CCUCCCCCU-----------AGCGGGCCcag -5'
28948 3' -63 NC_006146.1 + 153903 0.71 0.371675
Target:  5'- aGGGAGagaGGAGGGGGAggcgggcgcccUUGCCUGGa-- -3'
miRNA:   3'- -CCCUCa--CCUCCCCCU-----------AGCGGGCCcag -5'
28948 3' -63 NC_006146.1 + 3784 0.71 0.379363
Target:  5'- gGGGGGgggGGGGGGGGGggGCaCgCGGGg- -3'
miRNA:   3'- -CCCUCa--CCUCCCCCUagCG-G-GCCCag -5'
28948 3' -63 NC_006146.1 + 141863 0.7 0.444561
Target:  5'- gGGGAGgagGGAGGGGaGAggcUGCUgGGGa- -3'
miRNA:   3'- -CCCUCa--CCUCCCC-CUa--GCGGgCCCag -5'
28948 3' -63 NC_006146.1 + 140127 0.7 0.411161
Target:  5'- aGGGGGUGGcggaggugguGGcGGGGGUgC-CCCGGGUa -3'
miRNA:   3'- -CCCUCACC----------UC-CCCCUA-GcGGGCCCAg -5'
28948 3' -63 NC_006146.1 + 33209 0.71 0.377817
Target:  5'- gGGGAGgccGGAGGGGGAgccgggaugggGCUgGGGUUc -3'
miRNA:   3'- -CCCUCa--CCUCCCCCUag---------CGGgCCCAG- -5'
28948 3' -63 NC_006146.1 + 43628 0.73 0.287906
Target:  5'- aGGGAGUGGGcGGcGGGGcguggcCGCCUGGGg- -3'
miRNA:   3'- -CCCUCACCU-CC-CCCUa-----GCGGGCCCag -5'
28948 3' -63 NC_006146.1 + 167331 0.7 0.41854
Target:  5'- -uGAGUGGAcGGGGGAuuucauuUCGCCCucuGGGa- -3'
miRNA:   3'- ccCUCACCU-CCCCCU-------AGCGGG---CCCag -5'
28948 3' -63 NC_006146.1 + 127097 0.73 0.30077
Target:  5'- aGGGAgGUGGugucAGGGGGGUcgaCGCCCGGa-- -3'
miRNA:   3'- -CCCU-CACC----UCCCCCUA---GCGGGCCcag -5'
28948 3' -63 NC_006146.1 + 156981 0.71 0.371675
Target:  5'- aGGGAGagaGGAGGGGGAggcgggcgcccUUGCCUGGa-- -3'
miRNA:   3'- -CCCUCa--CCUCCCCCU-----------AGCGGGCCcag -5'
28948 3' -63 NC_006146.1 + 3839 0.7 0.419365
Target:  5'- uGGAGccggcgGGuaAGGGGGGUCGCCCuGGa- -3'
miRNA:   3'- cCCUCa-----CC--UCCCCCUAGCGGGcCCag -5'
28948 3' -63 NC_006146.1 + 148019 0.7 0.444561
Target:  5'- gGGGAGgagGGAGGGGaGAggcUGCUgGGGa- -3'
miRNA:   3'- -CCCUCa--CCUCCCC-CUa--GCGGgCCCag -5'
28948 3' -63 NC_006146.1 + 161748 0.72 0.306702
Target:  5'- cGGGGGUGGcggcugagguccgAGGGGG--CGCCUGGG-Cg -3'
miRNA:   3'- -CCCUCACC-------------UCCCCCuaGCGGGCCCaG- -5'
28948 3' -63 NC_006146.1 + 147747 0.71 0.371675
Target:  5'- aGGGAGagaGGAGGGGGAggcgggcgcccUUGCCUGGa-- -3'
miRNA:   3'- -CCCUCa--CCUCCCCCU-----------AGCGGGCCcag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.