miRNA display CGI


Results 1 - 20 of 235 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28949 5' -69.1 NC_006146.1 + 118570 0.65 0.379244
Target:  5'- cGCCGCCC-CGGgcaccccGGCCCacgucAGGGUCagcaCCUAc -3'
miRNA:   3'- -CGGCGGGaGCC-------CCGGG-----UCCCGG----GGAU- -5'
28949 5' -69.1 NC_006146.1 + 16183 0.66 0.350512
Target:  5'- gGUCGCCaggCGGGGUCC--GGCCUCUc -3'
miRNA:   3'- -CGGCGGga-GCCCCGGGucCCGGGGAu -5'
28949 5' -69.1 NC_006146.1 + 131109 0.66 0.35773
Target:  5'- cGCCGUCCcagaagcCGGGaGCUCcGGGCCCa-- -3'
miRNA:   3'- -CGGCGGGa------GCCC-CGGGuCCCGGGgau -5'
28949 5' -69.1 NC_006146.1 + 109343 0.66 0.357003
Target:  5'- cGUgGCCCUCGGGGUggggaauagacagCgAGGGCguccCCCg- -3'
miRNA:   3'- -CGgCGGGAGCCCCG-------------GgUCCCG----GGGau -5'
28949 5' -69.1 NC_006146.1 + 42016 0.66 0.342693
Target:  5'- uGCCGagcuacuCCCUCuGGGCCC-GGGCUCa-- -3'
miRNA:   3'- -CGGC-------GGGAGcCCCGGGuCCCGGGgau -5'
28949 5' -69.1 NC_006146.1 + 48263 0.66 0.343398
Target:  5'- cGCCGCCgUCcuGGCgCgaaagAGGGCCCCg- -3'
miRNA:   3'- -CGGCGGgAGccCCGgG-----UCCCGGGGau -5'
28949 5' -69.1 NC_006146.1 + 130469 0.66 0.350512
Target:  5'- cCCGCCUaCGGGGCCgCugccGCCCCg- -3'
miRNA:   3'- cGGCGGGaGCCCCGG-Gucc-CGGGGau -5'
28949 5' -69.1 NC_006146.1 + 19261 0.66 0.350512
Target:  5'- gGUCGCCaggCGGGGUCC--GGCCUCUc -3'
miRNA:   3'- -CGGCGGga-GCCCCGGGucCCGGGGAu -5'
28949 5' -69.1 NC_006146.1 + 25417 0.66 0.350512
Target:  5'- gGUCGCCaggCGGGGUCC--GGCCUCUc -3'
miRNA:   3'- -CGGCGGga-GCCCCGGGucCCGGGGAu -5'
28949 5' -69.1 NC_006146.1 + 169568 0.66 0.346232
Target:  5'- gGCUuCCC-CGGGGCCCgagcgcgcgucggguGGGGCCUg-- -3'
miRNA:   3'- -CGGcGGGaGCCCCGGG---------------UCCCGGGgau -5'
28949 5' -69.1 NC_006146.1 + 102867 0.66 0.343398
Target:  5'- aGCCGCCaccuggUCGuGGCC--GGGCCCCa- -3'
miRNA:   3'- -CGGCGGg-----AGCcCCGGguCCCGGGGau -5'
28949 5' -69.1 NC_006146.1 + 95524 0.66 0.350512
Target:  5'- --aGCUgUCGGGuGCggcgccuggCCAGGGUCCCUAu -3'
miRNA:   3'- cggCGGgAGCCC-CG---------GGUCCCGGGGAU- -5'
28949 5' -69.1 NC_006146.1 + 49992 0.66 0.33639
Target:  5'- gGCCGCCacaUUgugcacgaaggGGGGCaCCaccgaagcagaaGGGGCCCCg- -3'
miRNA:   3'- -CGGCGGg--AG-----------CCCCG-GG------------UCCCGGGGau -5'
28949 5' -69.1 NC_006146.1 + 30372 0.66 0.365051
Target:  5'- uGCCGuCCCUCccaGGGCUagguuugcugUAGGGCCgCCa- -3'
miRNA:   3'- -CGGC-GGGAGc--CCCGG----------GUCCCGG-GGau -5'
28949 5' -69.1 NC_006146.1 + 22339 0.66 0.350512
Target:  5'- gGUCGCCaggCGGGGUCC--GGCCUCUc -3'
miRNA:   3'- -CGGCGGga-GCCCCGGGucCCGGGGAu -5'
28949 5' -69.1 NC_006146.1 + 123150 0.66 0.350512
Target:  5'- gGCCGCUCUCcGucCCCAGGgccaGCCCCUc -3'
miRNA:   3'- -CGGCGGGAGcCccGGGUCC----CGGGGAu -5'
28949 5' -69.1 NC_006146.1 + 28495 0.66 0.350512
Target:  5'- gGUCGCCaggCGGGGUCC--GGCCUCUc -3'
miRNA:   3'- -CGGCGGga-GCCCCGGGucCCGGGGAu -5'
28949 5' -69.1 NC_006146.1 + 164453 0.66 0.350512
Target:  5'- gGuuGUUgUUGGGGCCCcauggaccccAGGGCCCa-- -3'
miRNA:   3'- -CggCGGgAGCCCCGGG----------UCCCGGGgau -5'
28949 5' -69.1 NC_006146.1 + 168636 0.66 0.341285
Target:  5'- gGCUuCCC-CGGGGCCCgagcgcgcgucgguGGGGCCUg-- -3'
miRNA:   3'- -CGGcGGGaGCCCCGGG--------------UCCCGGGgau -5'
28949 5' -69.1 NC_006146.1 + 167703 0.66 0.346232
Target:  5'- gGCUuCCC-CGGGGCCCgagcgcgcgucggguGGGGCCUg-- -3'
miRNA:   3'- -CGGcGGGaGCCCCGGG---------------UCCCGGGgau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.