Results 1 - 20 of 235 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28949 | 5' | -69.1 | NC_006146.1 | + | 401 | 0.72 | 0.143775 |
Target: 5'- cGCCGCgCgCUgGGGGUCCGGGGaagccCCCCg- -3' miRNA: 3'- -CGGCG-G-GAgCCCCGGGUCCC-----GGGGau -5' |
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28949 | 5' | -69.1 | NC_006146.1 | + | 432 | 0.67 | 0.329485 |
Target: 5'- cGCuCGcCCCUCGGGucgcgggacacGCCCccGGGUCCCc- -3' miRNA: 3'- -CG-GC-GGGAGCCC-----------CGGGu-CCCGGGGau -5' |
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28949 | 5' | -69.1 | NC_006146.1 | + | 726 | 0.73 | 0.118837 |
Target: 5'- cCCGCCCUCGGGaGCCCccucaGCCCCc- -3' miRNA: 3'- cGGCGGGAGCCC-CGGGucc--CGGGGau -5' |
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28949 | 5' | -69.1 | NC_006146.1 | + | 912 | 0.66 | 0.35773 |
Target: 5'- cGCCGCCCccCGGGaCCCcGGGCgcgcgccggccuCCCg- -3' miRNA: 3'- -CGGCGGGa-GCCCcGGGuCCCG------------GGGau -5' |
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28949 | 5' | -69.1 | NC_006146.1 | + | 1164 | 0.66 | 0.343398 |
Target: 5'- gGCCGCCC-CGGGGCUC----CCCCg- -3' miRNA: 3'- -CGGCGGGaGCCCCGGGucccGGGGau -5' |
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28949 | 5' | -69.1 | NC_006146.1 | + | 1336 | 0.66 | 0.33639 |
Target: 5'- -gCGCgCUCGGGcCCCGGGgaaGCCCCc- -3' miRNA: 3'- cgGCGgGAGCCCcGGGUCC---CGGGGau -5' |
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28949 | 5' | -69.1 | NC_006146.1 | + | 1363 | 0.67 | 0.329485 |
Target: 5'- cGCuCGcCCCUCGGGucgcgggacacGCCCccGGGUCCCc- -3' miRNA: 3'- -CG-GC-GGGAGCCC-----------CGGGu-CCCGGGGau -5' |
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28949 | 5' | -69.1 | NC_006146.1 | + | 1657 | 0.73 | 0.118837 |
Target: 5'- cCCGCCCUCGGGaGCCCccucaGCCCCc- -3' miRNA: 3'- cGGCGGGAGCCC-CGGGucc--CGGGGau -5' |
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28949 | 5' | -69.1 | NC_006146.1 | + | 1844 | 0.66 | 0.35773 |
Target: 5'- cGCCGCCCccCGGGaCCCcGGGCgcgcgccggccuCCCg- -3' miRNA: 3'- -CGGCGGGa-GCCCcGGGuCCCG------------GGGau -5' |
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28949 | 5' | -69.1 | NC_006146.1 | + | 2096 | 0.66 | 0.343398 |
Target: 5'- gGCCGCCC-CGGGGCUC----CCCCg- -3' miRNA: 3'- -CGGCGGGaGCCCCGGGucccGGGGau -5' |
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28949 | 5' | -69.1 | NC_006146.1 | + | 2268 | 0.66 | 0.33639 |
Target: 5'- -gCGCgCUCGGGcCCCGGGgaaGCCCCc- -3' miRNA: 3'- cgGCGgGAGCCCcGGGUCC---CGGGGau -5' |
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28949 | 5' | -69.1 | NC_006146.1 | + | 2295 | 0.67 | 0.329485 |
Target: 5'- cGCuCGcCCCUCGGGucgcgggacacGCCCccGGGUCCCc- -3' miRNA: 3'- -CG-GC-GGGAGCCC-----------CGGGu-CCCGGGGau -5' |
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28949 | 5' | -69.1 | NC_006146.1 | + | 2589 | 0.73 | 0.118837 |
Target: 5'- cCCGCCCUCGGGaGCCCccucaGCCCCc- -3' miRNA: 3'- cGGCGGGAGCCC-CGGGucc--CGGGGau -5' |
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28949 | 5' | -69.1 | NC_006146.1 | + | 2776 | 0.66 | 0.35773 |
Target: 5'- cGCCGCCCccCGGGaCCCcGGGCgcgcgccggccuCCCg- -3' miRNA: 3'- -CGGCGGGa-GCCCcGGGuCCCG------------GGGau -5' |
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28949 | 5' | -69.1 | NC_006146.1 | + | 3028 | 0.66 | 0.343398 |
Target: 5'- gGCCGCCC-CGGGGCUC----CCCCg- -3' miRNA: 3'- -CGGCGGGaGCCCCGGGucccGGGGau -5' |
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28949 | 5' | -69.1 | NC_006146.1 | + | 3200 | 0.66 | 0.33639 |
Target: 5'- -gCGCgCUCGGGcCCCGGGgaaGCCCCc- -3' miRNA: 3'- cgGCGgGAGCCCcGGGUCC---CGGGGau -5' |
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28949 | 5' | -69.1 | NC_006146.1 | + | 3227 | 0.67 | 0.329485 |
Target: 5'- cGCuCGcCCCUCGGGucgcgggacacGCCCccGGGUCCCc- -3' miRNA: 3'- -CG-GC-GGGAGCCC-----------CGGGu-CCCGGGGau -5' |
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28949 | 5' | -69.1 | NC_006146.1 | + | 3521 | 0.73 | 0.118837 |
Target: 5'- cCCGCCCUCGGGaGCCCccucaGCCCCc- -3' miRNA: 3'- cGGCGGGAGCCC-CGGGucc--CGGGGau -5' |
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28949 | 5' | -69.1 | NC_006146.1 | + | 3708 | 0.66 | 0.35773 |
Target: 5'- cGCCGCCCccCGGGaCCCcGGGCgcgcgccggccuCCCg- -3' miRNA: 3'- -CGGCGGGa-GCCCcGGGuCCCG------------GGGau -5' |
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28949 | 5' | -69.1 | NC_006146.1 | + | 5235 | 0.76 | 0.071289 |
Target: 5'- uGCCGgCCUCGGGGCUguGGGgUCCa- -3' miRNA: 3'- -CGGCgGGAGCCCCGGguCCCgGGGau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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