Results 21 - 40 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2895 | 3' | -50 | NC_001493.1 | + | 109846 | 0.66 | 0.996886 |
Target: 5'- cUCGAGcgCGcccgggGCGAUgUGACCGuUGACa -3' miRNA: 3'- -AGUUCuaGC------UGUUGgACUGGC-ACUGg -5' |
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2895 | 3' | -50 | NC_001493.1 | + | 3268 | 0.66 | 0.996329 |
Target: 5'- aCGAGAagGAUgaggAACCgggcaccGGCCGUGACg -3' miRNA: 3'- aGUUCUagCUG----UUGGa------CUGGCACUGg -5' |
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2895 | 3' | -50 | NC_001493.1 | + | 55060 | 0.66 | 0.996672 |
Target: 5'- cCGAGAacugugaugguggCGGCGggGCgCUGACCGUGGgCg -3' miRNA: 3'- aGUUCUa------------GCUGU--UG-GACUGGCACUgG- -5' |
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2895 | 3' | -50 | NC_001493.1 | + | 131631 | 0.66 | 0.995693 |
Target: 5'- aCGAGGUCGAUGGguuuuuccgcCCUGuCCGcGAUCa -3' miRNA: 3'- aGUUCUAGCUGUU----------GGACuGGCaCUGG- -5' |
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2895 | 3' | -50 | NC_001493.1 | + | 18064 | 0.66 | 0.996886 |
Target: 5'- ---cGGUCGGgGGCCUGggugccGCCGUGAa- -3' miRNA: 3'- aguuCUAGCUgUUGGAC------UGGCACUgg -5' |
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2895 | 3' | -50 | NC_001493.1 | + | 70547 | 0.67 | 0.994152 |
Target: 5'- cUCGAG--CGAUAGCCUcGCgCGUGACg -3' miRNA: 3'- -AGUUCuaGCUGUUGGAcUG-GCACUGg -5' |
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2895 | 3' | -50 | NC_001493.1 | + | 1944 | 0.67 | 0.992194 |
Target: 5'- cCAAGGUCGAuCGACgUGGCaaaGcUGACg -3' miRNA: 3'- aGUUCUAGCU-GUUGgACUGg--C-ACUGg -5' |
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2895 | 3' | -50 | NC_001493.1 | + | 94341 | 0.67 | 0.994152 |
Target: 5'- gUAGGAUCGcgugguACGACCUcacGGCCccggguauccugGUGACCu -3' miRNA: 3'- aGUUCUAGC------UGUUGGA---CUGG------------CACUGG- -5' |
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2895 | 3' | -50 | NC_001493.1 | + | 60287 | 0.67 | 0.991037 |
Target: 5'- -----uUCGAUGaguccACCUGuCCGUGACCc -3' miRNA: 3'- aguucuAGCUGU-----UGGACuGGCACUGG- -5' |
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2895 | 3' | -50 | NC_001493.1 | + | 117498 | 0.67 | 0.992194 |
Target: 5'- cCAAGGUCGAuCGACgUGGCaaaGcUGACg -3' miRNA: 3'- aGUUCUAGCU-GUUGgACUGg--C-ACUGg -5' |
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2895 | 3' | -50 | NC_001493.1 | + | 59637 | 0.67 | 0.992194 |
Target: 5'- cCGGGG-CGACAAUCgaaauCCGUGACg -3' miRNA: 3'- aGUUCUaGCUGUUGGacu--GGCACUGg -5' |
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2895 | 3' | -50 | NC_001493.1 | + | 81615 | 0.67 | 0.99323 |
Target: 5'- aCcuGggCGACAcugacGCCccGACCGUGGCUg -3' miRNA: 3'- aGuuCuaGCUGU-----UGGa-CUGGCACUGG- -5' |
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2895 | 3' | -50 | NC_001493.1 | + | 27629 | 0.67 | 0.989749 |
Target: 5'- cUCGGGAUCGGCcccgauACCaccGGCCGgGACa -3' miRNA: 3'- -AGUUCUAGCUGu-----UGGa--CUGGCaCUGg -5' |
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2895 | 3' | -50 | NC_001493.1 | + | 28047 | 0.67 | 0.99323 |
Target: 5'- --cGGGUgGAuCGACCgGACCGggcGGCCg -3' miRNA: 3'- aguUCUAgCU-GUUGGaCUGGCa--CUGG- -5' |
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2895 | 3' | -50 | NC_001493.1 | + | 131582 | 0.68 | 0.983099 |
Target: 5'- cCGAGAUgGGCGuCCaUGACUGgagcGACCu -3' miRNA: 3'- aGUUCUAgCUGUuGG-ACUGGCa---CUGG- -5' |
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2895 | 3' | -50 | NC_001493.1 | + | 129172 | 0.68 | 0.983099 |
Target: 5'- aUCGcgcGGAUCGuCGgaagaugcgugcACCUGcgcGCCGUGACUa -3' miRNA: 3'- -AGU---UCUAGCuGU------------UGGAC---UGGCACUGG- -5' |
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2895 | 3' | -50 | NC_001493.1 | + | 45895 | 0.68 | 0.981016 |
Target: 5'- gCGAGG-CGGCcagaaaaauGACCUGACUGacggGGCCa -3' miRNA: 3'- aGUUCUaGCUG---------UUGGACUGGCa---CUGG- -5' |
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2895 | 3' | -50 | NC_001493.1 | + | 13618 | 0.68 | 0.983099 |
Target: 5'- aUCGcgcGGAUCGuCGgaagaugcgugcACCUGcgcGCCGUGACUa -3' miRNA: 3'- -AGU---UCUAGCuGU------------UGGAC---UGGCACUGG- -5' |
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2895 | 3' | -50 | NC_001493.1 | + | 16027 | 0.68 | 0.983099 |
Target: 5'- cCGAGAUgGGCGuCCaUGACUGgagcGACCu -3' miRNA: 3'- aGUUCUAgCUGUuGG-ACUGGCa---CUGG- -5' |
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2895 | 3' | -50 | NC_001493.1 | + | 32784 | 0.68 | 0.983099 |
Target: 5'- cCGGGAUCGGCAcgcGCggauaUGGCCccgGACCg -3' miRNA: 3'- aGUUCUAGCUGU---UGg----ACUGGca-CUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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