miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2895 3' -50 NC_001493.1 + 17847 0.66 0.99527
Target:  5'- -uGAGGUCGGCGAggaUGgucgcgcaaauguccACCGUGGCCc -3'
miRNA:   3'- agUUCUAGCUGUUgg-AC---------------UGGCACUGG- -5'
2895 3' -50 NC_001493.1 + 30405 0.66 0.99497
Target:  5'- gUCAAGAUCauuuACGACaCcGACCGgGAUCg -3'
miRNA:   3'- -AGUUCUAGc---UGUUG-GaCUGGCaCUGG- -5'
2895 3' -50 NC_001493.1 + 126422 0.66 0.99497
Target:  5'- -----uUCGGCGAUCggUGACCGcGGCCg -3'
miRNA:   3'- aguucuAGCUGUUGG--ACUGGCaCUGG- -5'
2895 3' -50 NC_001493.1 + 64948 0.66 0.99497
Target:  5'- aCGAGcgCGAUAACCgggGugCGccgcgUGAUCg -3'
miRNA:   3'- aGUUCuaGCUGUUGGa--CugGC-----ACUGG- -5'
2895 3' -50 NC_001493.1 + 10868 0.66 0.99497
Target:  5'- -----uUCGGCGAUCggUGACCGcGGCCg -3'
miRNA:   3'- aguucuAGCUGUUGG--ACUGGCaCUGG- -5'
2895 3' -50 NC_001493.1 + 70547 0.67 0.994152
Target:  5'- cUCGAG--CGAUAGCCUcGCgCGUGACg -3'
miRNA:   3'- -AGUUCuaGCUGUUGGAcUG-GCACUGg -5'
2895 3' -50 NC_001493.1 + 94341 0.67 0.994152
Target:  5'- gUAGGAUCGcgugguACGACCUcacGGCCccggguauccugGUGACCu -3'
miRNA:   3'- aGUUCUAGC------UGUUGGA---CUGG------------CACUGG- -5'
2895 3' -50 NC_001493.1 + 81615 0.67 0.99323
Target:  5'- aCcuGggCGACAcugacGCCccGACCGUGGCUg -3'
miRNA:   3'- aGuuCuaGCUGU-----UGGa-CUGGCACUGG- -5'
2895 3' -50 NC_001493.1 + 28047 0.67 0.99323
Target:  5'- --cGGGUgGAuCGACCgGACCGggcGGCCg -3'
miRNA:   3'- aguUCUAgCU-GUUGGaCUGGCa--CUGG- -5'
2895 3' -50 NC_001493.1 + 117498 0.67 0.992194
Target:  5'- cCAAGGUCGAuCGACgUGGCaaaGcUGACg -3'
miRNA:   3'- aGUUCUAGCU-GUUGgACUGg--C-ACUGg -5'
2895 3' -50 NC_001493.1 + 59637 0.67 0.992194
Target:  5'- cCGGGG-CGACAAUCgaaauCCGUGACg -3'
miRNA:   3'- aGUUCUaGCUGUUGGacu--GGCACUGg -5'
2895 3' -50 NC_001493.1 + 1944 0.67 0.992194
Target:  5'- cCAAGGUCGAuCGACgUGGCaaaGcUGACg -3'
miRNA:   3'- aGUUCUAGCU-GUUGgACUGg--C-ACUGg -5'
2895 3' -50 NC_001493.1 + 60287 0.67 0.991037
Target:  5'- -----uUCGAUGaguccACCUGuCCGUGACCc -3'
miRNA:   3'- aguucuAGCUGU-----UGGACuGGCACUGG- -5'
2895 3' -50 NC_001493.1 + 27629 0.67 0.989749
Target:  5'- cUCGGGAUCGGCcccgauACCaccGGCCGgGACa -3'
miRNA:   3'- -AGUUCUAGCUGu-----UGGa--CUGGCaCUGg -5'
2895 3' -50 NC_001493.1 + 13618 0.68 0.983099
Target:  5'- aUCGcgcGGAUCGuCGgaagaugcgugcACCUGcgcGCCGUGACUa -3'
miRNA:   3'- -AGU---UCUAGCuGU------------UGGAC---UGGCACUGG- -5'
2895 3' -50 NC_001493.1 + 32784 0.68 0.983099
Target:  5'- cCGGGAUCGGCAcgcGCggauaUGGCCccgGACCg -3'
miRNA:   3'- aGUUCUAGCUGU---UGg----ACUGGca-CUGG- -5'
2895 3' -50 NC_001493.1 + 16027 0.68 0.983099
Target:  5'- cCGAGAUgGGCGuCCaUGACUGgagcGACCu -3'
miRNA:   3'- aGUUCUAgCUGUuGG-ACUGGCa---CUGG- -5'
2895 3' -50 NC_001493.1 + 131582 0.68 0.983099
Target:  5'- cCGAGAUgGGCGuCCaUGACUGgagcGACCu -3'
miRNA:   3'- aGUUCUAgCUGUuGG-ACUGGCa---CUGG- -5'
2895 3' -50 NC_001493.1 + 129172 0.68 0.983099
Target:  5'- aUCGcgcGGAUCGuCGgaagaugcgugcACCUGcgcGCCGUGACUa -3'
miRNA:   3'- -AGU---UCUAGCuGU------------UGGAC---UGGCACUGG- -5'
2895 3' -50 NC_001493.1 + 88040 0.68 0.983099
Target:  5'- uUCGAGAUCGGUAACCgGgaacauaccGCCGgucucGACCa -3'
miRNA:   3'- -AGUUCUAGCUGUUGGaC---------UGGCa----CUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.