miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2895 5' -50.1 NC_001493.1 + 17568 0.66 0.994948
Target:  5'- uGGcGCgCGUggACGAGUUGAUCGGCcucgUGg -3'
miRNA:   3'- gCC-CG-GUA--UGUUCGACUAGCUGaa--AC- -5'
2895 5' -50.1 NC_001493.1 + 133123 0.66 0.994948
Target:  5'- uGGcGCgCGUggACGAGUUGAUCGGCcucgUGg -3'
miRNA:   3'- gCC-CG-GUA--UGUUCGACUAGCUGaa--AC- -5'
2895 5' -50.1 NC_001493.1 + 5120 0.66 0.994948
Target:  5'- uCGGGUCGUGgGGGa-GGUCGACa--- -3'
miRNA:   3'- -GCCCGGUAUgUUCgaCUAGCUGaaac -5'
2895 5' -50.1 NC_001493.1 + 120674 0.66 0.994948
Target:  5'- uCGGGUCGUGgGGGa-GGUCGACa--- -3'
miRNA:   3'- -GCCCGGUAUgUUCgaCUAGCUGaaac -5'
2895 5' -50.1 NC_001493.1 + 55099 0.66 0.994948
Target:  5'- uCGGGaCCGcgggagcgagcUcCGGGCUGGUCGGCUc-- -3'
miRNA:   3'- -GCCC-GGU-----------AuGUUCGACUAGCUGAaac -5'
2895 5' -50.1 NC_001493.1 + 51499 0.66 0.99317
Target:  5'- gGGGUCAauucuUugGAGCggacguuggGAUCGACUccUUGa -3'
miRNA:   3'- gCCCGGU-----AugUUCGa--------CUAGCUGA--AAC- -5'
2895 5' -50.1 NC_001493.1 + 128883 0.66 0.99317
Target:  5'- gCGGGCCGUGCGGuGC---UCGGCg--- -3'
miRNA:   3'- -GCCCGGUAUGUU-CGacuAGCUGaaac -5'
2895 5' -50.1 NC_001493.1 + 13329 0.66 0.99317
Target:  5'- gCGGGCCGUGCGGuGC---UCGGCg--- -3'
miRNA:   3'- -GCCCGGUAUGUU-CGacuAGCUGaaac -5'
2895 5' -50.1 NC_001493.1 + 17757 0.66 0.992111
Target:  5'- gGGGCCGcaacGCGGGCgugcccggGAUCGugUUc- -3'
miRNA:   3'- gCCCGGUa---UGUUCGa-------CUAGCugAAac -5'
2895 5' -50.1 NC_001493.1 + 133311 0.66 0.992111
Target:  5'- gGGGCCGcaacGCGGGCgugcccggGAUCGugUUc- -3'
miRNA:   3'- gCCCGGUa---UGUUCGa-------CUAGCugAAac -5'
2895 5' -50.1 NC_001493.1 + 26649 0.67 0.989603
Target:  5'- uGGuGCUcgACGAGCaggUGGUCGACg--- -3'
miRNA:   3'- gCC-CGGuaUGUUCG---ACUAGCUGaaac -5'
2895 5' -50.1 NC_001493.1 + 42954 0.67 0.987823
Target:  5'- aGGGCCAUAgGAGCgccgauaaccccGAUCG-CUUccUGg -3'
miRNA:   3'- gCCCGGUAUgUUCGa-----------CUAGCuGAA--AC- -5'
2895 5' -50.1 NC_001493.1 + 50325 0.67 0.984722
Target:  5'- gCGGGCCu--CAAGUUGGgcCGGCUg-- -3'
miRNA:   3'- -GCCCGGuauGUUCGACUa-GCUGAaac -5'
2895 5' -50.1 NC_001493.1 + 19438 0.68 0.978268
Target:  5'- aCGGGagacuCGGGCUcAUCGACUUUGa -3'
miRNA:   3'- -GCCCgguauGUUCGAcUAGCUGAAAC- -5'
2895 5' -50.1 NC_001493.1 + 68527 0.68 0.978268
Target:  5'- gGGGCUcgACGGGUauAUCGACUgUGu -3'
miRNA:   3'- gCCCGGuaUGUUCGacUAGCUGAaAC- -5'
2895 5' -50.1 NC_001493.1 + 44989 0.68 0.969991
Target:  5'- gCGGGCCGUcgaucacuaucgGCAGGCcGcgCGGCUc-- -3'
miRNA:   3'- -GCCCGGUA------------UGUUCGaCuaGCUGAaac -5'
2895 5' -50.1 NC_001493.1 + 111081 0.7 0.926793
Target:  5'- aGGGCCAU-CGAGCcGAUCGGu---- -3'
miRNA:   3'- gCCCGGUAuGUUCGaCUAGCUgaaac -5'
2895 5' -50.1 NC_001493.1 + 20735 1.1 0.007798
Target:  5'- gCGGGCCAUACAAGCUGAUCGACUUUGa -3'
miRNA:   3'- -GCCCGGUAUGUUCGACUAGCUGAAAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.