miRNA display CGI


Results 1 - 20 of 241 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28950 5' -55.3 NC_006146.1 + 13502 1.13 0.002435
Target:  5'- uCCAGGGCUUCAGAGCCCAGAACGUCCc -3'
miRNA:   3'- -GGUCCCGAAGUCUCGGGUCUUGCAGG- -5'
28950 5' -55.3 NC_006146.1 + 16580 1.13 0.002435
Target:  5'- uCCAGGGCUUCAGAGCCCAGAACGUCCc -3'
miRNA:   3'- -GGUCCCGAAGUCUCGGGUCUUGCAGG- -5'
28950 5' -55.3 NC_006146.1 + 19658 1.13 0.002435
Target:  5'- uCCAGGGCUUCAGAGCCCAGAACGUCCc -3'
miRNA:   3'- -GGUCCCGAAGUCUCGGGUCUUGCAGG- -5'
28950 5' -55.3 NC_006146.1 + 22736 1.13 0.002435
Target:  5'- uCCAGGGCUUCAGAGCCCAGAACGUCCc -3'
miRNA:   3'- -GGUCCCGAAGUCUCGGGUCUUGCAGG- -5'
28950 5' -55.3 NC_006146.1 + 25814 1.13 0.002435
Target:  5'- uCCAGGGCUUCAGAGCCCAGAACGUCCc -3'
miRNA:   3'- -GGUCCCGAAGUCUCGGGUCUUGCAGG- -5'
28950 5' -55.3 NC_006146.1 + 28892 1.13 0.002435
Target:  5'- uCCAGGGCUUCAGAGCCCAGAACGUCCc -3'
miRNA:   3'- -GGUCCCGAAGUCUCGGGUCUUGCAGG- -5'
28950 5' -55.3 NC_006146.1 + 19952 0.81 0.248446
Target:  5'- cCCuGGGCagaUCAGGGCCgGGGGCGUCUg -3'
miRNA:   3'- -GGuCCCGa--AGUCUCGGgUCUUGCAGG- -5'
28950 5' -55.3 NC_006146.1 + 118636 0.8 0.286034
Target:  5'- -gGGGGCgccCGGGGCCCAGuacacguGCGUCCa -3'
miRNA:   3'- ggUCCCGaa-GUCUCGGGUCu------UGCAGG- -5'
28950 5' -55.3 NC_006146.1 + 56258 0.78 0.369449
Target:  5'- gCGGGGCcgUCcucggcggggagcgaGGAGgCCAGGACGUCCa -3'
miRNA:   3'- gGUCCCGa-AG---------------UCUCgGGUCUUGCAGG- -5'
28950 5' -55.3 NC_006146.1 + 74967 0.78 0.374274
Target:  5'- aCCGGGGCcaguaCAGAGUCCAGaAGCGgggCCa -3'
miRNA:   3'- -GGUCCCGaa---GUCUCGGGUC-UUGCa--GG- -5'
28950 5' -55.3 NC_006146.1 + 75270 0.78 0.374274
Target:  5'- aCGGGGauggccgaGGAGCCgAGAGCGUCCg -3'
miRNA:   3'- gGUCCCgaag----UCUCGGgUCUUGCAGG- -5'
28950 5' -55.3 NC_006146.1 + 65210 0.78 0.374274
Target:  5'- -gGGGGCccUgGGAGCCCGGG-CGUCCa -3'
miRNA:   3'- ggUCCCGa-AgUCUCGGGUCUuGCAGG- -5'
28950 5' -55.3 NC_006146.1 + 39733 0.77 0.407517
Target:  5'- aCgGGGGCcUCGGAGUgauugaCCAGggUGUCCa -3'
miRNA:   3'- -GgUCCCGaAGUCUCG------GGUCuuGCAGG- -5'
28950 5' -55.3 NC_006146.1 + 167511 0.77 0.424817
Target:  5'- aCAGGcacGCUUCAGGGCCUguAGGACG-CCg -3'
miRNA:   3'- gGUCC---CGAAGUCUCGGG--UCUUGCaGG- -5'
28950 5' -55.3 NC_006146.1 + 105724 0.76 0.469906
Target:  5'- cCUAGGGCUccaAGAGCCCcaAGAGC-UCCa -3'
miRNA:   3'- -GGUCCCGAag-UCUCGGG--UCUUGcAGG- -5'
28950 5' -55.3 NC_006146.1 + 122516 0.76 0.479216
Target:  5'- -uGGaGGCcgCGGAGCCCGGGugGUUCg -3'
miRNA:   3'- ggUC-CCGaaGUCUCGGGUCUugCAGG- -5'
28950 5' -55.3 NC_006146.1 + 108973 0.75 0.498101
Target:  5'- aCCAGGGCccUGGAGCCCcuGAugGcCCg -3'
miRNA:   3'- -GGUCCCGaaGUCUCGGGu-CUugCaGG- -5'
28950 5' -55.3 NC_006146.1 + 33037 0.75 0.517312
Target:  5'- cCCGGGGC---GGGGCCCGGGacACGcCCa -3'
miRNA:   3'- -GGUCCCGaagUCUCGGGUCU--UGCaGG- -5'
28950 5' -55.3 NC_006146.1 + 78489 0.75 0.527029
Target:  5'- --uGGGCUUCAGaAGCCCGGAuUGgCCa -3'
miRNA:   3'- gguCCCGAAGUC-UCGGGUCUuGCaGG- -5'
28950 5' -55.3 NC_006146.1 + 85916 0.75 0.536812
Target:  5'- gCGGGGCUUUacccuGGGGCCUGGAugG-CCu -3'
miRNA:   3'- gGUCCCGAAG-----UCUCGGGUCUugCaGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.