miRNA display CGI


Results 21 - 40 of 241 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28950 5' -55.3 NC_006146.1 + 104690 0.66 0.944194
Target:  5'- -aGGGGCagCuGGGCCUGGAucuCGUCg -3'
miRNA:   3'- ggUCCCGaaGuCUCGGGUCUu--GCAGg -5'
28950 5' -55.3 NC_006146.1 + 4954 0.66 0.944194
Target:  5'- cCCGGGGaccaGGGGCCacgAGAGCcUCCu -3'
miRNA:   3'- -GGUCCCgaagUCUCGGg--UCUUGcAGG- -5'
28950 5' -55.3 NC_006146.1 + 56750 0.66 0.944194
Target:  5'- cCCAGGGC--CAGcaugcgccuGGUCCGGAGCcucaUCCg -3'
miRNA:   3'- -GGUCCCGaaGUC---------UCGGGUCUUGc---AGG- -5'
28950 5' -55.3 NC_006146.1 + 14104 0.66 0.944194
Target:  5'- cCCAGGGCgggaugUCGGGGCugCUGGcGGCGgCCu -3'
miRNA:   3'- -GGUCCCGa-----AGUCUCG--GGUC-UUGCaGG- -5'
28950 5' -55.3 NC_006146.1 + 54435 0.66 0.944194
Target:  5'- -gAGGGUcUCGGAgauuacGCCCgAGAccucgcgaaccGCGUCCa -3'
miRNA:   3'- ggUCCCGaAGUCU------CGGG-UCU-----------UGCAGG- -5'
28950 5' -55.3 NC_006146.1 + 41114 0.66 0.94375
Target:  5'- gCAGGGCcuccacUUUAGGGUCCcgggggaGGGGCGUgCg -3'
miRNA:   3'- gGUCCCG------AAGUCUCGGG-------UCUUGCAgG- -5'
28950 5' -55.3 NC_006146.1 + 153090 0.66 0.941492
Target:  5'- aCCAGGGggcgcgaguagcacaUgcucUCGGAGCCCGGGAC--CCu -3'
miRNA:   3'- -GGUCCC---------------Ga---AGUCUCGGGUCUUGcaGG- -5'
28950 5' -55.3 NC_006146.1 + 131499 0.66 0.94011
Target:  5'- gCCAGGGaucgaccgggaaAGGGCCCAGggUaaCCg -3'
miRNA:   3'- -GGUCCCgaag--------UCUCGGGUCuuGcaGG- -5'
28950 5' -55.3 NC_006146.1 + 86330 0.66 0.939644
Target:  5'- gCAGGGuCUugaUCAGGGCCCuc-ACaUCCu -3'
miRNA:   3'- gGUCCC-GA---AGUCUCGGGucuUGcAGG- -5'
28950 5' -55.3 NC_006146.1 + 53789 0.66 0.939644
Target:  5'- aCgAGGGCcUC--GGCCCGcgcGGCGUCCa -3'
miRNA:   3'- -GgUCCCGaAGucUCGGGUc--UUGCAGG- -5'
28950 5' -55.3 NC_006146.1 + 75135 0.66 0.939644
Target:  5'- gCCGGGGCcaguaCAGAGUCCAaAAcCGgggCCa -3'
miRNA:   3'- -GGUCCCGaa---GUCUCGGGUcUU-GCa--GG- -5'
28950 5' -55.3 NC_006146.1 + 40168 0.66 0.938707
Target:  5'- uCCGGGGa---AGAGCCCGccgcccuccuCGUCCu -3'
miRNA:   3'- -GGUCCCgaagUCUCGGGUcuu-------GCAGG- -5'
28950 5' -55.3 NC_006146.1 + 109399 0.66 0.93776
Target:  5'- aCAGGGCggcaggggccuccUCGGAGCCCuGGugaUCCu -3'
miRNA:   3'- gGUCCCGa------------AGUCUCGGGuCUugcAGG- -5'
28950 5' -55.3 NC_006146.1 + 71009 0.66 0.934862
Target:  5'- cCCGGGGgg-CAGAgGCgCCGGAucagcuggACGUCUa -3'
miRNA:   3'- -GGUCCCgaaGUCU-CG-GGUCU--------UGCAGG- -5'
28950 5' -55.3 NC_006146.1 + 166839 0.66 0.934862
Target:  5'- gCCcGGGUccgcguggagaUUCAGAGUgagCAGGACGUCUu -3'
miRNA:   3'- -GGuCCCG-----------AAGUCUCGg--GUCUUGCAGG- -5'
28950 5' -55.3 NC_006146.1 + 110009 0.66 0.934862
Target:  5'- -uGGGGCcUCAGGGCUC----CGUCCu -3'
miRNA:   3'- ggUCCCGaAGUCUCGGGucuuGCAGG- -5'
28950 5' -55.3 NC_006146.1 + 44746 0.66 0.934862
Target:  5'- gCCGcGGGCggcugugguugUCGGGGCCCGGcgGGCGgggaacCCa -3'
miRNA:   3'- -GGU-CCCGa----------AGUCUCGGGUC--UUGCa-----GG- -5'
28950 5' -55.3 NC_006146.1 + 160661 0.66 0.934862
Target:  5'- cUCAGGGaggcCUUCAGGGCCggcacaugacCAGGGCcgguagaggcagGUCCg -3'
miRNA:   3'- -GGUCCC----GAAGUCUCGG----------GUCUUG------------CAGG- -5'
28950 5' -55.3 NC_006146.1 + 101291 0.66 0.934862
Target:  5'- cCCGGGGacgu-GGGCCU-GGACGUCUc -3'
miRNA:   3'- -GGUCCCgaaguCUCGGGuCUUGCAGG- -5'
28950 5' -55.3 NC_006146.1 + 137031 0.66 0.934862
Target:  5'- cCCGGGGa---GGAGgCCGGGugGgggCCu -3'
miRNA:   3'- -GGUCCCgaagUCUCgGGUCUugCa--GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.