miRNA display CGI


Results 1 - 20 of 241 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28950 5' -55.3 NC_006146.1 + 4954 0.66 0.944194
Target:  5'- cCCGGGGaccaGGGGCCacgAGAGCcUCCu -3'
miRNA:   3'- -GGUCCCgaagUCUCGGg--UCUUGcAGG- -5'
28950 5' -55.3 NC_006146.1 + 6428 0.73 0.616831
Target:  5'- cCCAGGGCcaUguGGGCCCuGGG-GUCCa -3'
miRNA:   3'- -GGUCCCGa-AguCUCGGGuCUUgCAGG- -5'
28950 5' -55.3 NC_006146.1 + 12318 0.71 0.765392
Target:  5'- aCCcGGGCUUCAG-GCCCgccucaGUCCc -3'
miRNA:   3'- -GGuCCCGAAGUCuCGGGucuug-CAGG- -5'
28950 5' -55.3 NC_006146.1 + 12351 0.73 0.647211
Target:  5'- cCCuGGGCcUCAG-GCCCuccGCGUCCc -3'
miRNA:   3'- -GGuCCCGaAGUCuCGGGucuUGCAGG- -5'
28950 5' -55.3 NC_006146.1 + 12458 0.68 0.880673
Target:  5'- gCCGGGGCcuUUCAGgcccucgGGCCCcucuGGAC-UCCg -3'
miRNA:   3'- -GGUCCCG--AAGUC-------UCGGGu---CUUGcAGG- -5'
28950 5' -55.3 NC_006146.1 + 12820 0.68 0.888225
Target:  5'- aCAGGGU--UAGAGCCCuccGGCGgCCg -3'
miRNA:   3'- gGUCCCGaaGUCUCGGGuc-UUGCaGG- -5'
28950 5' -55.3 NC_006146.1 + 13127 0.66 0.948514
Target:  5'- aCgGGGGCUcCcGGGCCCAcGAggagagcaACGUCa -3'
miRNA:   3'- -GgUCCCGAaGuCUCGGGU-CU--------UGCAGg -5'
28950 5' -55.3 NC_006146.1 + 13267 0.67 0.911043
Target:  5'- aCCAGGGgaccggcgcccCAGAGCCCcucGGGuccgccuccagGCGUCCu -3'
miRNA:   3'- -GGUCCCgaa--------GUCUCGGG---UCU-----------UGCAGG- -5'
28950 5' -55.3 NC_006146.1 + 13365 0.71 0.736812
Target:  5'- -aGGGGagccgcccUCGGGGCCCAGGGCcccuaGUCCa -3'
miRNA:   3'- ggUCCCga------AGUCUCGGGUCUUG-----CAGG- -5'
28950 5' -55.3 NC_006146.1 + 13502 1.13 0.002435
Target:  5'- uCCAGGGCUUCAGAGCCCAGAACGUCCc -3'
miRNA:   3'- -GGUCCCGAAGUCUCGGGUCUUGCAGG- -5'
28950 5' -55.3 NC_006146.1 + 13598 0.69 0.843948
Target:  5'- cCCAGGGCccuccagucCAGA-CCCAGAgACGcCCa -3'
miRNA:   3'- -GGUCCCGaa-------GUCUcGGGUCU-UGCaGG- -5'
28950 5' -55.3 NC_006146.1 + 14104 0.66 0.944194
Target:  5'- cCCAGGGCgggaugUCGGGGCugCUGGcGGCGgCCu -3'
miRNA:   3'- -GGUCCCGa-----AGUCUCG--GGUC-UUGCaGG- -5'
28950 5' -55.3 NC_006146.1 + 14527 0.7 0.81059
Target:  5'- -uGGGGCUggAGAGCCUGGAcCGggCCc -3'
miRNA:   3'- ggUCCCGAagUCUCGGGUCUuGCa-GG- -5'
28950 5' -55.3 NC_006146.1 + 15397 0.71 0.765392
Target:  5'- aCCcGGGCUUCAG-GCCCgccucaGUCCc -3'
miRNA:   3'- -GGuCCCGAAGUCuCGGGucuug-CAGG- -5'
28950 5' -55.3 NC_006146.1 + 15430 0.73 0.647211
Target:  5'- cCCuGGGCcUCAG-GCCCuccGCGUCCc -3'
miRNA:   3'- -GGuCCCGaAGUCuCGGGucuUGCAGG- -5'
28950 5' -55.3 NC_006146.1 + 15537 0.68 0.880673
Target:  5'- gCCGGGGCcuUUCAGgcccucgGGCCCcucuGGAC-UCCg -3'
miRNA:   3'- -GGUCCCG--AAGUC-------UCGGGu---CUUGcAGG- -5'
28950 5' -55.3 NC_006146.1 + 15899 0.68 0.888225
Target:  5'- aCAGGGU--UAGAGCCCuccGGCGgCCg -3'
miRNA:   3'- gGUCCCGaaGUCUCGGGuc-UUGCaGG- -5'
28950 5' -55.3 NC_006146.1 + 16345 0.67 0.911043
Target:  5'- aCCAGGGgaccggcgcccCAGAGCCCcucGGGuccgccuccagGCGUCCu -3'
miRNA:   3'- -GGUCCCgaa--------GUCUCGGG---UCU-----------UGCAGG- -5'
28950 5' -55.3 NC_006146.1 + 16443 0.71 0.736812
Target:  5'- -aGGGGagccgcccUCGGGGCCCAGGGCcccuaGUCCa -3'
miRNA:   3'- ggUCCCga------AGUCUCGGGUCUUG-----CAGG- -5'
28950 5' -55.3 NC_006146.1 + 16580 1.13 0.002435
Target:  5'- uCCAGGGCUUCAGAGCCCAGAACGUCCc -3'
miRNA:   3'- -GGUCCCGAAGUCUCGGGUCUUGCAGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.