Results 61 - 80 of 562 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28955 | 3' | -62.9 | NC_006146.1 | + | 154454 | 0.66 | 0.601969 |
Target: 5'- aGGGGCC-CugGGCCCcgAGGgC-GGCUc -3' miRNA: 3'- gCUCCGGaGugUCGGG--UCCgGuCCGG- -5' |
|||||||
28955 | 3' | -62.9 | NC_006146.1 | + | 45049 | 0.66 | 0.601969 |
Target: 5'- -aGGGCCUCGCGGgCCuuGGGCUugaugaccGGUCg -3' miRNA: 3'- gcUCCGGAGUGUCgGG--UCCGGu-------CCGG- -5' |
|||||||
28955 | 3' | -62.9 | NC_006146.1 | + | 130403 | 0.66 | 0.635087 |
Target: 5'- cCGAGGCagaguccgcugccuUUCGCGGCCCcucuGCCccccuucacccaccAGGCCa -3' miRNA: 3'- -GCUCCG--------------GAGUGUCGGGuc--CGG--------------UCCGG- -5' |
|||||||
28955 | 3' | -62.9 | NC_006146.1 | + | 148298 | 0.66 | 0.601969 |
Target: 5'- aGGGGCC-CugGGCCCcgAGGgC-GGCUc -3' miRNA: 3'- gCUCCGGaGugUCGGG--UCCgGuCCGG- -5' |
|||||||
28955 | 3' | -62.9 | NC_006146.1 | + | 14667 | 0.66 | 0.591293 |
Target: 5'- --uGGUaaaugUCAgGGCCCAGggggguucgcguuGCCAGGCCa -3' miRNA: 3'- gcuCCGg----AGUgUCGGGUC-------------CGGUCCGG- -5' |
|||||||
28955 | 3' | -62.9 | NC_006146.1 | + | 17745 | 0.66 | 0.591293 |
Target: 5'- --uGGUaaaugUCAgGGCCCAGggggguucgcguuGCCAGGCCa -3' miRNA: 3'- gcuCCGg----AGUgUCGGGUC-------------CGGUCCGG- -5' |
|||||||
28955 | 3' | -62.9 | NC_006146.1 | + | 167273 | 0.66 | 0.631188 |
Target: 5'- cCGGGGCCgCGCguggggauGGCCggcgggagGGGCCGGcGCCu -3' miRNA: 3'- -GCUCCGGaGUG--------UCGGg-------UCCGGUC-CGG- -5' |
|||||||
28955 | 3' | -62.9 | NC_006146.1 | + | 26862 | 0.66 | 0.601969 |
Target: 5'- uGAGcccCCUCGCAGauCCCAGugaagaagagcGCCGGGUCg -3' miRNA: 3'- gCUCc--GGAGUGUC--GGGUC-----------CGGUCCGG- -5' |
|||||||
28955 | 3' | -62.9 | NC_006146.1 | + | 33661 | 0.66 | 0.621438 |
Target: 5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3' miRNA: 3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5' |
|||||||
28955 | 3' | -62.9 | NC_006146.1 | + | 102862 | 0.66 | 0.592262 |
Target: 5'- aGGGcaGCCgcCACcuGGUCguGGCCGGGCCc -3' miRNA: 3'- gCUC--CGGa-GUG--UCGGguCCGGUCCGG- -5' |
|||||||
28955 | 3' | -62.9 | NC_006146.1 | + | 147113 | 0.66 | 0.592262 |
Target: 5'- uGGGGCUcaGCGGgcCCCAGacGCgCAGGCCg -3' miRNA: 3'- gCUCCGGagUGUC--GGGUC--CG-GUCCGG- -5' |
|||||||
28955 | 3' | -62.9 | NC_006146.1 | + | 33847 | 0.66 | 0.621438 |
Target: 5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3' miRNA: 3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5' |
|||||||
28955 | 3' | -62.9 | NC_006146.1 | + | 80335 | 0.66 | 0.620464 |
Target: 5'- uGGGGCCUUcu--CCCGGGucuucucCCGGGCCc -3' miRNA: 3'- gCUCCGGAGugucGGGUCC-------GGUCCGG- -5' |
|||||||
28955 | 3' | -62.9 | NC_006146.1 | + | 165945 | 0.66 | 0.640937 |
Target: 5'- gGAGGCuCUCGUGGCCCcugguccccgGGGCaCAgagcacGGCCa -3' miRNA: 3'- gCUCCG-GAGUGUCGGG----------UCCG-GU------CCGG- -5' |
|||||||
28955 | 3' | -62.9 | NC_006146.1 | + | 34218 | 0.66 | 0.621438 |
Target: 5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3' miRNA: 3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5' |
|||||||
28955 | 3' | -62.9 | NC_006146.1 | + | 34032 | 0.66 | 0.621438 |
Target: 5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3' miRNA: 3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5' |
|||||||
28955 | 3' | -62.9 | NC_006146.1 | + | 34311 | 0.66 | 0.621438 |
Target: 5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3' miRNA: 3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5' |
|||||||
28955 | 3' | -62.9 | NC_006146.1 | + | 99558 | 0.66 | 0.631188 |
Target: 5'- cCGGGGCagagaUCGgGGUCCAGGagguagaagaCGGGCUu -3' miRNA: 3'- -GCUCCGg----AGUgUCGGGUCCg---------GUCCGG- -5' |
|||||||
28955 | 3' | -62.9 | NC_006146.1 | + | 33939 | 0.66 | 0.621438 |
Target: 5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3' miRNA: 3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5' |
|||||||
28955 | 3' | -62.9 | NC_006146.1 | + | 34404 | 0.66 | 0.621438 |
Target: 5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3' miRNA: 3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home