miRNA display CGI


Results 81 - 100 of 562 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28955 3' -62.9 NC_006146.1 + 55172 0.66 0.621438
Target:  5'- gGGGGUgacCGCGuCCCAGGCUGcGGCCg -3'
miRNA:   3'- gCUCCGga-GUGUcGGGUCCGGU-CCGG- -5'
28955 3' -62.9 NC_006146.1 + 47651 0.66 0.611697
Target:  5'- --uGGCCgcggCcCGGCCCAGcGCgGcGGCCa -3'
miRNA:   3'- gcuCCGGa---GuGUCGGGUC-CGgU-CCGG- -5'
28955 3' -62.9 NC_006146.1 + 148143 0.66 0.592262
Target:  5'- -uGGGCUucgugcuggUCAgGGCCCGGGUCuucucuacGGCCa -3'
miRNA:   3'- gcUCCGG---------AGUgUCGGGUCCGGu-------CCGG- -5'
28955 3' -62.9 NC_006146.1 + 128761 0.66 0.601969
Target:  5'- cCGAGGCCUUcuucuggaguGUGGCCagcaGGGCCGaagcgugaucGGCCa -3'
miRNA:   3'- -GCUCCGGAG----------UGUCGGg---UCCGGU----------CCGG- -5'
28955 3' -62.9 NC_006146.1 + 46384 0.66 0.631188
Target:  5'- -cAGGCCcccgucccUCGCcagGGCCgAGaCCAGGCCg -3'
miRNA:   3'- gcUCCGG--------AGUG---UCGGgUCcGGUCCGG- -5'
28955 3' -62.9 NC_006146.1 + 156356 0.66 0.630212
Target:  5'- aGcGGCCcaGCAGCuCCAGGgcccgguCCAGGCUc -3'
miRNA:   3'- gCuCCGGagUGUCG-GGUCC-------GGUCCGG- -5'
28955 3' -62.9 NC_006146.1 + 167273 0.66 0.631188
Target:  5'- cCGGGGCCgCGCguggggauGGCCggcgggagGGGCCGGcGCCu -3'
miRNA:   3'- -GCUCCGGaGUG--------UCGGg-------UCCGGUC-CGG- -5'
28955 3' -62.9 NC_006146.1 + 58191 0.66 0.601969
Target:  5'- -cGGGCCUCAgGgacGCCCugcugcGGGCCAGaCCc -3'
miRNA:   3'- gcUCCGGAGUgU---CGGG------UCCGGUCcGG- -5'
28955 3' -62.9 NC_006146.1 + 82031 0.66 0.592262
Target:  5'- gGAGuugcaGCCacaACAGcCCCAGGCCccGCCg -3'
miRNA:   3'- gCUC-----CGGag-UGUC-GGGUCCGGucCGG- -5'
28955 3' -62.9 NC_006146.1 + 128391 0.66 0.601969
Target:  5'- -cAGGCaguagcCGCAGUCCAGGCagaacacGGCCa -3'
miRNA:   3'- gcUCCGga----GUGUCGGGUCCGgu-----CCGG- -5'
28955 3' -62.9 NC_006146.1 + 125956 0.66 0.621438
Target:  5'- cCGGGGCCUCcccGCGcCCCuGGCCacgagAGGUUc -3'
miRNA:   3'- -GCUCCGGAG---UGUcGGGuCCGG-----UCCGG- -5'
28955 3' -62.9 NC_006146.1 + 146279 0.66 0.621438
Target:  5'- -cGGGCCUga-AGCCCGGGUUgAGGCg -3'
miRNA:   3'- gcUCCGGAgugUCGGGUCCGG-UCCGg -5'
28955 3' -62.9 NC_006146.1 + 137573 0.66 0.639962
Target:  5'- -cGGGUC-CGCugcccgguccuggAGCUCGGGCCggGGGCCg -3'
miRNA:   3'- gcUCCGGaGUG-------------UCGGGUCCGG--UCCGG- -5'
28955 3' -62.9 NC_006146.1 + 125938 0.66 0.631188
Target:  5'- aCGAGGUCUUGCGGagCCAGGagaagGGGUCu -3'
miRNA:   3'- -GCUCCGGAGUGUCg-GGUCCgg---UCCGG- -5'
28955 3' -62.9 NC_006146.1 + 99652 0.66 0.601969
Target:  5'- aGAGGCCgc----CCCccGCCAGGCCc -3'
miRNA:   3'- gCUCCGGagugucGGGucCGGUCCGG- -5'
28955 3' -62.9 NC_006146.1 + 105194 0.66 0.601969
Target:  5'- cCGGGGCCggGgAGCCgGGGgugcCCGGuGCCu -3'
miRNA:   3'- -GCUCCGGagUgUCGGgUCC----GGUC-CGG- -5'
28955 3' -62.9 NC_006146.1 + 142142 0.66 0.601969
Target:  5'- aGGGGCC-CugGGCCCcgAGGgC-GGCUc -3'
miRNA:   3'- gCUCCGGaGugUCGGG--UCCgGuCCGG- -5'
28955 3' -62.9 NC_006146.1 + 157781 0.66 0.591293
Target:  5'- -uGGGCCcgGgAGCCCccguccacaaacaGGGCCAGGUCc -3'
miRNA:   3'- gcUCCGGagUgUCGGG-------------UCCGGUCCGG- -5'
28955 3' -62.9 NC_006146.1 + 139571 0.66 0.611697
Target:  5'- uGAGGCCUguaAGCCCaaugAGGCUgcgggGGGCg -3'
miRNA:   3'- gCUCCGGAgugUCGGG----UCCGG-----UCCGg -5'
28955 3' -62.9 NC_006146.1 + 13057 0.66 0.611697
Target:  5'- aGGcGGCgCUCGguGCCCguccccuccgGGGCCAGcGCg -3'
miRNA:   3'- gCU-CCG-GAGUguCGGG----------UCCGGUC-CGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.