miRNA display CGI


Results 101 - 120 of 562 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28955 3' -62.9 NC_006146.1 + 137015 0.66 0.591293
Target:  5'- gGuAGGCCgggCACAcCCCggggaggAGGCCGGGUg -3'
miRNA:   3'- gC-UCCGGa--GUGUcGGG-------UCCGGUCCGg -5'
28955 3' -62.9 NC_006146.1 + 34125 0.66 0.621438
Target:  5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3'
miRNA:   3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5'
28955 3' -62.9 NC_006146.1 + 87013 0.66 0.631188
Target:  5'- -uAGGCCUCAUGGCUaguaacagAGGaaacaUCAGGCCg -3'
miRNA:   3'- gcUCCGGAGUGUCGGg-------UCC-----GGUCCGG- -5'
28955 3' -62.9 NC_006146.1 + 169137 0.66 0.631188
Target:  5'- cCGGGGCCgCGCguggggauGGCCggcgggagGGGCCGGcGCCu -3'
miRNA:   3'- -GCUCCGGaGUG--------UCGGg-------UCCGGUC-CGG- -5'
28955 3' -62.9 NC_006146.1 + 159541 0.66 0.621438
Target:  5'- ---uGCCUgacgCGCAGCgCCuGcGCCAGGCCc -3'
miRNA:   3'- gcucCGGA----GUGUCG-GGuC-CGGUCCGG- -5'
28955 3' -62.9 NC_006146.1 + 116037 0.66 0.621438
Target:  5'- -aAGGCCUcCACGGCCCGcuGCUGGGg- -3'
miRNA:   3'- gcUCCGGA-GUGUCGGGUc-CGGUCCgg -5'
28955 3' -62.9 NC_006146.1 + 53335 0.66 0.611697
Target:  5'- gGAGGCCcgGCGGCCgCGGGgC-GGCg -3'
miRNA:   3'- gCUCCGGagUGUCGG-GUCCgGuCCGg -5'
28955 3' -62.9 NC_006146.1 + 148143 0.66 0.592262
Target:  5'- -uGGGCUucgugcuggUCAgGGCCCGGGUCuucucuacGGCCa -3'
miRNA:   3'- gcUCCGG---------AGUgUCGGGUCCGGu-------CCGG- -5'
28955 3' -62.9 NC_006146.1 + 53867 0.66 0.630212
Target:  5'- gCGAcgcuGGCCcucagCGCccccguagggcguAGCCCAGGUCcaGGGCCc -3'
miRNA:   3'- -GCU----CCGGa----GUG-------------UCGGGUCCGG--UCCGG- -5'
28955 3' -62.9 NC_006146.1 + 167273 0.66 0.631188
Target:  5'- cCGGGGCCgCGCguggggauGGCCggcgggagGGGCCGGcGCCu -3'
miRNA:   3'- -GCUCCGGaGUG--------UCGGg-------UCCGGUC-CGG- -5'
28955 3' -62.9 NC_006146.1 + 156356 0.66 0.630212
Target:  5'- aGcGGCCcaGCAGCuCCAGGgcccgguCCAGGCUc -3'
miRNA:   3'- gCuCCGGagUGUCG-GGUCC-------GGUCCGG- -5'
28955 3' -62.9 NC_006146.1 + 137573 0.66 0.639962
Target:  5'- -cGGGUC-CGCugcccgguccuggAGCUCGGGCCggGGGCCg -3'
miRNA:   3'- gcUCCGGaGUG-------------UCGGGUCCGG--UCCGG- -5'
28955 3' -62.9 NC_006146.1 + 147113 0.66 0.592262
Target:  5'- uGGGGCUcaGCGGgcCCCAGacGCgCAGGCCg -3'
miRNA:   3'- gCUCCGGagUGUC--GGGUC--CG-GUCCGG- -5'
28955 3' -62.9 NC_006146.1 + 46112 0.66 0.640937
Target:  5'- gCGAGcaGCagcagGCAuGCCCGGGCCcuGGCCg -3'
miRNA:   3'- -GCUC--CGgag--UGU-CGGGUCCGGu-CCGG- -5'
28955 3' -62.9 NC_006146.1 + 99558 0.66 0.631188
Target:  5'- cCGGGGCagagaUCGgGGUCCAGGagguagaagaCGGGCUu -3'
miRNA:   3'- -GCUCCGg----AGUgUCGGGUCCg---------GUCCGG- -5'
28955 3' -62.9 NC_006146.1 + 126320 0.67 0.553756
Target:  5'- -aAGGCa--GCGGCCCggGGGCCAGGa- -3'
miRNA:   3'- gcUCCGgagUGUCGGG--UCCGGUCCgg -5'
28955 3' -62.9 NC_006146.1 + 113572 0.67 0.564282
Target:  5'- cCGGGGCCccgcccccagagagcCACGcGUCCAGGUCcacaaAGGCCu -3'
miRNA:   3'- -GCUCCGGa--------------GUGU-CGGGUCCGG-----UCCGG- -5'
28955 3' -62.9 NC_006146.1 + 170069 0.67 0.582581
Target:  5'- cCGGGGCCgCGCguggggauGGCCggcgggagGGGCCGGcGCCg -3'
miRNA:   3'- -GCUCCGGaGUG--------UCGGg-------UCCGGUC-CGG- -5'
28955 3' -62.9 NC_006146.1 + 115191 0.67 0.563322
Target:  5'- gGAGGCCagcggcgggCAgAGCCCcccGGCgGcGGCCg -3'
miRNA:   3'- gCUCCGGa--------GUgUCGGGu--CCGgU-CCGG- -5'
28955 3' -62.9 NC_006146.1 + 127501 0.67 0.563322
Target:  5'- gCGGGGg-UCGCAGCCgGGGCagAGGCa -3'
miRNA:   3'- -GCUCCggAGUGUCGGgUCCGg-UCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.