miRNA display CGI


Results 121 - 140 of 562 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28955 3' -62.9 NC_006146.1 + 24772 0.67 0.534773
Target:  5'- cCGGGGCCUUucaGGCCC---UCGGGCCc -3'
miRNA:   3'- -GCUCCGGAGug-UCGGGuccGGUCCGG- -5'
28955 3' -62.9 NC_006146.1 + 114136 0.67 0.582581
Target:  5'- gGAGGCCUgCGCGuGCuCCGcGaUCAGGCCc -3'
miRNA:   3'- gCUCCGGA-GUGU-CG-GGUcC-GGUCCGG- -5'
28955 3' -62.9 NC_006146.1 + 22684 0.67 0.534773
Target:  5'- gGAGGgacCCcgGCAGCCCGgguGGCCccagAGGCCa -3'
miRNA:   3'- gCUCC---GGagUGUCGGGU---CCGG----UCCGG- -5'
28955 3' -62.9 NC_006146.1 + 25762 0.67 0.534773
Target:  5'- gGAGGgacCCcgGCAGCCCGgguGGCCccagAGGCCa -3'
miRNA:   3'- gCUCC---GGagUGUCGGGU---CCGG----UCCGG- -5'
28955 3' -62.9 NC_006146.1 + 16528 0.67 0.534773
Target:  5'- gGAGGgacCCcgGCAGCCCGgguGGCCccagAGGCCa -3'
miRNA:   3'- gCUCC---GGagUGUCGGGU---CCGG----UCCGG- -5'
28955 3' -62.9 NC_006146.1 + 12459 0.67 0.534773
Target:  5'- cCGGGGCCUUucaGGCCC---UCGGGCCc -3'
miRNA:   3'- -GCUCCGGAGug-UCGGGuccGGUCCGG- -5'
28955 3' -62.9 NC_006146.1 + 170069 0.67 0.582581
Target:  5'- cCGGGGCCgCGCguggggauGGCCggcgggagGGGCCGGcGCCg -3'
miRNA:   3'- -GCUCCGGaGUG--------UCGGg-------UCCGGUC-CGG- -5'
28955 3' -62.9 NC_006146.1 + 53775 0.67 0.582581
Target:  5'- gGAGGUCUCGCcggacgagGGCCUcGGCCcgcgcGGCg -3'
miRNA:   3'- gCUCCGGAGUG--------UCGGGuCCGGu----CCGg -5'
28955 3' -62.9 NC_006146.1 + 26679 0.67 0.582581
Target:  5'- -cGGGCCUgucagACAGCCCugucuaGGGCCGGGa- -3'
miRNA:   3'- gcUCCGGAg----UGUCGGG------UCCGGUCCgg -5'
28955 3' -62.9 NC_006146.1 + 108379 0.67 0.572933
Target:  5'- gGAGaCCgagacagaacaCGCAGCCCcccaGGGCCAGGUg -3'
miRNA:   3'- gCUCcGGa----------GUGUCGGG----UCCGGUCCGg -5'
28955 3' -62.9 NC_006146.1 + 62410 0.67 0.582581
Target:  5'- aGAGGaCCUCGuCGG---AGGCCAGGCa -3'
miRNA:   3'- gCUCC-GGAGU-GUCgggUCCGGUCCGg -5'
28955 3' -62.9 NC_006146.1 + 53355 0.67 0.572933
Target:  5'- uGAacaGCCUgaaUGCGGCCCAGGCCccgagggagAGGCg -3'
miRNA:   3'- gCUc--CGGA---GUGUCGGGUCCGG---------UCCGg -5'
28955 3' -62.9 NC_006146.1 + 118981 0.67 0.582581
Target:  5'- cCGGGGCCgcccgUCGguGCCUcggAGGCCcccGCCg -3'
miRNA:   3'- -GCUCCGG-----AGUguCGGG---UCCGGuc-CGG- -5'
28955 3' -62.9 NC_006146.1 + 126190 0.67 0.572933
Target:  5'- -cAGGCCggcCAGCggGGGCCAcGGCCa -3'
miRNA:   3'- gcUCCGGaguGUCGggUCCGGU-CCGG- -5'
28955 3' -62.9 NC_006146.1 + 149871 0.67 0.572933
Target:  5'- uGGGGCCUCGgagGGCCUggaGGGCUAGaGUg -3'
miRNA:   3'- gCUCCGGAGUg--UCGGG---UCCGGUC-CGg -5'
28955 3' -62.9 NC_006146.1 + 152949 0.67 0.572933
Target:  5'- uGGGGCCUCGgagGGCCUggaGGGCUAGaGUg -3'
miRNA:   3'- gCUCCGGAGUg--UCGGG---UCCGGUC-CGg -5'
28955 3' -62.9 NC_006146.1 + 11419 0.67 0.582581
Target:  5'- aGA-GCCU-GCAGgaCCAGGCCAagguGGCCa -3'
miRNA:   3'- gCUcCGGAgUGUCg-GGUCCGGU----CCGG- -5'
28955 3' -62.9 NC_006146.1 + 167155 0.67 0.582581
Target:  5'- aGGGGaCC-CAC--CCCGGGCUgaaGGGCCa -3'
miRNA:   3'- gCUCC-GGaGUGucGGGUCCGG---UCCGG- -5'
28955 3' -62.9 NC_006146.1 + 70840 0.67 0.582581
Target:  5'- --cGGCCUCAucuucCAGCCCucuucccGGCgCAGGUg -3'
miRNA:   3'- gcuCCGGAGU-----GUCGGGu------CCG-GUCCGg -5'
28955 3' -62.9 NC_006146.1 + 15538 0.67 0.534773
Target:  5'- cCGGGGCCUUucaGGCCC---UCGGGCCc -3'
miRNA:   3'- -GCUCCGGAGug-UCGGGuccGGUCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.