miRNA display CGI


Results 141 - 160 of 562 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28955 3' -62.9 NC_006146.1 + 74708 0.67 0.582581
Target:  5'- gGGGGgCUUAC-GCUCAgGGCCagaaAGGCCc -3'
miRNA:   3'- gCUCCgGAGUGuCGGGU-CCGG----UCCGG- -5'
28955 3' -62.9 NC_006146.1 + 62410 0.67 0.582581
Target:  5'- aGAGGaCCUCGuCGG---AGGCCAGGCa -3'
miRNA:   3'- gCUCC-GGAGU-GUCgggUCCGGUCCGg -5'
28955 3' -62.9 NC_006146.1 + 53775 0.67 0.582581
Target:  5'- gGAGGUCUCGCcggacgagGGCCUcGGCCcgcgcGGCg -3'
miRNA:   3'- gCUCCGGAGUG--------UCGGGuCCGGu----CCGg -5'
28955 3' -62.9 NC_006146.1 + 139682 0.67 0.563322
Target:  5'- aGGGGcCCUCAguGUgCCAGGCUugugguuaAGGUCc -3'
miRNA:   3'- gCUCC-GGAGUguCG-GGUCCGG--------UCCGG- -5'
28955 3' -62.9 NC_006146.1 + 160666 0.67 0.553756
Target:  5'- gGAGGCCuUCAgGGCC--GGCacaugaccaGGGCCg -3'
miRNA:   3'- gCUCCGG-AGUgUCGGguCCGg--------UCCGG- -5'
28955 3' -62.9 NC_006146.1 + 12459 0.67 0.534773
Target:  5'- cCGGGGCCUUucaGGCCC---UCGGGCCc -3'
miRNA:   3'- -GCUCCGGAGug-UCGGGuccGGUCCGG- -5'
28955 3' -62.9 NC_006146.1 + 13450 0.67 0.534773
Target:  5'- gGAGGgacCCcgGCAGCCCGgguGGCCccagAGGCCa -3'
miRNA:   3'- gCUCC---GGagUGUCGGGU---CCGG----UCCGG- -5'
28955 3' -62.9 NC_006146.1 + 15538 0.67 0.534773
Target:  5'- cCGGGGCCUUucaGGCCC---UCGGGCCc -3'
miRNA:   3'- -GCUCCGGAGug-UCGGGuccGGUCCGG- -5'
28955 3' -62.9 NC_006146.1 + 114136 0.67 0.582581
Target:  5'- gGAGGCCUgCGCGuGCuCCGcGaUCAGGCCc -3'
miRNA:   3'- gCUCCGGA-GUGU-CG-GGUcC-GGUCCGG- -5'
28955 3' -62.9 NC_006146.1 + 27850 0.67 0.534773
Target:  5'- cCGGGGCCUUucaGGCCC---UCGGGCCc -3'
miRNA:   3'- -GCUCCGGAGug-UCGGGuccGGUCCGG- -5'
28955 3' -62.9 NC_006146.1 + 16528 0.67 0.534773
Target:  5'- gGAGGgacCCcgGCAGCCCGgguGGCCccagAGGCCa -3'
miRNA:   3'- gCUCC---GGagUGUCGGGU---CCGG----UCCGG- -5'
28955 3' -62.9 NC_006146.1 + 18616 0.67 0.534773
Target:  5'- cCGGGGCCUUucaGGCCC---UCGGGCCc -3'
miRNA:   3'- -GCUCCGGAGug-UCGGGuccGGUCCGG- -5'
28955 3' -62.9 NC_006146.1 + 19606 0.67 0.534773
Target:  5'- gGAGGgacCCcgGCAGCCCGgguGGCCccagAGGCCa -3'
miRNA:   3'- gCUCC---GGagUGUCGGGU---CCGG----UCCGG- -5'
28955 3' -62.9 NC_006146.1 + 21694 0.67 0.534773
Target:  5'- cCGGGGCCUUucaGGCCC---UCGGGCCc -3'
miRNA:   3'- -GCUCCGGAGug-UCGGGuccGGUCCGG- -5'
28955 3' -62.9 NC_006146.1 + 22684 0.67 0.534773
Target:  5'- gGAGGgacCCcgGCAGCCCGgguGGCCccagAGGCCa -3'
miRNA:   3'- gCUCC---GGagUGUCGGGU---CCGG----UCCGG- -5'
28955 3' -62.9 NC_006146.1 + 24772 0.67 0.534773
Target:  5'- cCGGGGCCUUucaGGCCC---UCGGGCCc -3'
miRNA:   3'- -GCUCCGGAGug-UCGGGuccGGUCCGG- -5'
28955 3' -62.9 NC_006146.1 + 28840 0.67 0.534773
Target:  5'- gGAGGgacCCcgGCAGCCCGgguGGCCccagAGGCCa -3'
miRNA:   3'- gCUCC---GGagUGUCGGGU---CCGG----UCCGG- -5'
28955 3' -62.9 NC_006146.1 + 67211 0.67 0.534773
Target:  5'- cCGuGGCCggUCGCcuGGCC--GGCCAGGCa -3'
miRNA:   3'- -GCuCCGG--AGUG--UCGGguCCGGUCCGg -5'
28955 3' -62.9 NC_006146.1 + 109146 0.67 0.538552
Target:  5'- aGAGGCCUCgGCcgcugccuugguuucGGUCCcGGCCcuuagucugAGGCCc -3'
miRNA:   3'- gCUCCGGAG-UG---------------UCGGGuCCGG---------UCCGG- -5'
28955 3' -62.9 NC_006146.1 + 157494 0.67 0.553756
Target:  5'- -cGGGCCUUGCAGaCCuGGCUgAGGCa -3'
miRNA:   3'- gcUCCGGAGUGUCgGGuCCGG-UCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.