miRNA display CGI


Results 161 - 180 of 562 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28955 3' -62.9 NC_006146.1 + 17445 0.67 0.582581
Target:  5'- -cGGGCCUgucagACAGCCCugucuaGGGCCGGGa- -3'
miRNA:   3'- gcUCCGGAg----UGUCGGG------UCCGGUCCgg -5'
28955 3' -62.9 NC_006146.1 + 168633 0.67 0.563322
Target:  5'- gGGGGCUUCcccGgGGCCCGagcgcgcgucGGUgGGGCCu -3'
miRNA:   3'- gCUCCGGAG---UgUCGGGU----------CCGgUCCGG- -5'
28955 3' -62.9 NC_006146.1 + 109146 0.67 0.538552
Target:  5'- aGAGGCCUCgGCcgcugccuugguuucGGUCCcGGCCcuuagucugAGGCCc -3'
miRNA:   3'- gCUCCGGAG-UG---------------UCGGGuCCGG---------UCCGG- -5'
28955 3' -62.9 NC_006146.1 + 115191 0.67 0.563322
Target:  5'- gGAGGCCagcggcgggCAgAGCCCcccGGCgGcGGCCg -3'
miRNA:   3'- gCUCCGGa--------GUgUCGGGu--CCGgU-CCGG- -5'
28955 3' -62.9 NC_006146.1 + 74244 0.67 0.562364
Target:  5'- -cAGGCCcugCGCGGCcgucuccCCGGGCU-GGCCa -3'
miRNA:   3'- gcUCCGGa--GUGUCG-------GGUCCGGuCCGG- -5'
28955 3' -62.9 NC_006146.1 + 65183 0.67 0.544238
Target:  5'- uGGGGCuCUUGgAGCCCuAGGCgCucuggGGGCCc -3'
miRNA:   3'- gCUCCG-GAGUgUCGGG-UCCG-G-----UCCGG- -5'
28955 3' -62.9 NC_006146.1 + 122029 0.67 0.553756
Target:  5'- gCGcAGGCCUgGC-GCCUggAGGCCGacGGCUu -3'
miRNA:   3'- -GC-UCCGGAgUGuCGGG--UCCGGU--CCGG- -5'
28955 3' -62.9 NC_006146.1 + 66568 0.67 0.544238
Target:  5'- uGuGGCgCagGCGGCgCAGGC-AGGCCg -3'
miRNA:   3'- gCuCCG-GagUGUCGgGUCCGgUCCGG- -5'
28955 3' -62.9 NC_006146.1 + 1456 0.67 0.553756
Target:  5'- gGAGGCCcggccuccacaCACGGCCUcuccgcGGGCCuccacacguGGCCu -3'
miRNA:   3'- gCUCCGGa----------GUGUCGGG------UCCGGu--------CCGG- -5'
28955 3' -62.9 NC_006146.1 + 170496 0.67 0.544238
Target:  5'- gGGGGCUUCccCGGaCCCccagcgcgcggcGGGCgGGGCCu -3'
miRNA:   3'- gCUCCGGAGu-GUC-GGG------------UCCGgUCCGG- -5'
28955 3' -62.9 NC_006146.1 + 34046 0.67 0.544238
Target:  5'- cCGGGGCCUaugcCGGCCgGGGgUcccguggcacgGGGCCg -3'
miRNA:   3'- -GCUCCGGAgu--GUCGGgUCCgG-----------UCCGG- -5'
28955 3' -62.9 NC_006146.1 + 45530 0.67 0.553756
Target:  5'- gGGGGCCUg--GGCCUccuuGGGCUuGGCCg -3'
miRNA:   3'- gCUCCGGAgugUCGGG----UCCGGuCCGG- -5'
28955 3' -62.9 NC_006146.1 + 157494 0.67 0.553756
Target:  5'- -cGGGCCUUGCAGaCCuGGCUgAGGCa -3'
miRNA:   3'- gcUCCGGAGUGUCgGGuCCGG-UCCGg -5'
28955 3' -62.9 NC_006146.1 + 160666 0.67 0.553756
Target:  5'- gGAGGCCuUCAgGGCC--GGCacaugaccaGGGCCg -3'
miRNA:   3'- gCUCCGG-AGUgUCGGguCCGg--------UCCGG- -5'
28955 3' -62.9 NC_006146.1 + 139682 0.67 0.563322
Target:  5'- aGGGGcCCUCAguGUgCCAGGCUugugguuaAGGUCc -3'
miRNA:   3'- gCUCC-GGAGUguCG-GGUCCGG--------UCCGG- -5'
28955 3' -62.9 NC_006146.1 + 22684 0.67 0.534773
Target:  5'- gGAGGgacCCcgGCAGCCCGgguGGCCccagAGGCCa -3'
miRNA:   3'- gCUCC---GGagUGUCGGGU---CCGG----UCCGG- -5'
28955 3' -62.9 NC_006146.1 + 24772 0.67 0.534773
Target:  5'- cCGGGGCCUUucaGGCCC---UCGGGCCc -3'
miRNA:   3'- -GCUCCGGAGug-UCGGGuccGGUCCGG- -5'
28955 3' -62.9 NC_006146.1 + 25762 0.67 0.534773
Target:  5'- gGAGGgacCCcgGCAGCCCGgguGGCCccagAGGCCa -3'
miRNA:   3'- gCUCC---GGagUGUCGGGU---CCGG----UCCGG- -5'
28955 3' -62.9 NC_006146.1 + 27850 0.67 0.534773
Target:  5'- cCGGGGCCUUucaGGCCC---UCGGGCCc -3'
miRNA:   3'- -GCUCCGGAGug-UCGGGuccGGUCCGG- -5'
28955 3' -62.9 NC_006146.1 + 67211 0.67 0.534773
Target:  5'- cCGuGGCCggUCGCcuGGCC--GGCCAGGCa -3'
miRNA:   3'- -GCuCCGG--AGUG--UCGGguCCGGUCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.