miRNA display CGI


Results 61 - 80 of 562 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28955 3' -62.9 NC_006146.1 + 25023 0.73 0.249497
Target:  5'- aGAGGCC-CGCGGCCauugGGGCCAGcaagcgagaccaGCCc -3'
miRNA:   3'- gCUCCGGaGUGUCGGg---UCCGGUC------------CGG- -5'
28955 3' -62.9 NC_006146.1 + 18868 0.73 0.249497
Target:  5'- aGAGGCC-CGCGGCCauugGGGCCAGcaagcgagaccaGCCc -3'
miRNA:   3'- gCUCCGGaGUGUCGGg---UCCGGUC------------CGG- -5'
28955 3' -62.9 NC_006146.1 + 15790 0.73 0.249497
Target:  5'- aGAGGCC-CGCGGCCauugGGGCCAGcaagcgagaccaGCCc -3'
miRNA:   3'- gCUCCGGaGUGUCGGg---UCCGGUC------------CGG- -5'
28955 3' -62.9 NC_006146.1 + 12711 0.73 0.249497
Target:  5'- aGAGGCC-CGCGGCCauugGGGCCAGcaagcgagaccaGCCc -3'
miRNA:   3'- gCUCCGGaGUGUCGGg---UCCGGUC------------CGG- -5'
28955 3' -62.9 NC_006146.1 + 69862 0.73 0.249497
Target:  5'- gGAGGUCgggCGuagaGGCCCAGGuCCAcGGCCg -3'
miRNA:   3'- gCUCCGGa--GUg---UCGGGUCC-GGU-CCGG- -5'
28955 3' -62.9 NC_006146.1 + 142543 0.73 0.273205
Target:  5'- gGAGGUgguugcggUGCAGCCUAGGCUAGGCg -3'
miRNA:   3'- gCUCCGga------GUGUCGGGUCCGGUCCGg -5'
28955 3' -62.9 NC_006146.1 + 54242 0.73 0.273205
Target:  5'- aGA-GCCUCuggGCGGCCCcGGUCAGGCg -3'
miRNA:   3'- gCUcCGGAG---UGUCGGGuCCGGUCCGg -5'
28955 3' -62.9 NC_006146.1 + 3800 0.73 0.249497
Target:  5'- uGuGGCC-CACAGUCaggucuGGGUCAGGCCa -3'
miRNA:   3'- gCuCCGGaGUGUCGGg-----UCCGGUCCGG- -5'
28955 3' -62.9 NC_006146.1 + 43321 0.73 0.273205
Target:  5'- --cGGCCggCGCGGCCUcGGCCgcccaGGGCCa -3'
miRNA:   3'- gcuCCGGa-GUGUCGGGuCCGG-----UCCGG- -5'
28955 3' -62.9 NC_006146.1 + 49552 0.72 0.279408
Target:  5'- gGAGGCCaCGCcGgCCAGGCCcagcauGGCCu -3'
miRNA:   3'- gCUCCGGaGUGuCgGGUCCGGu-----CCGG- -5'
28955 3' -62.9 NC_006146.1 + 39077 0.72 0.31898
Target:  5'- --cGGCCUC-CGGUCUggggaAGGCCAgGGCCa -3'
miRNA:   3'- gcuCCGGAGuGUCGGG-----UCCGGU-CCGG- -5'
28955 3' -62.9 NC_006146.1 + 47744 0.72 0.312103
Target:  5'- cCGGGGCCUCcucGCGcGCCCuGGCgAguacGGCCu -3'
miRNA:   3'- -GCUCCGGAG---UGU-CGGGuCCGgU----CCGG- -5'
28955 3' -62.9 NC_006146.1 + 98974 0.72 0.312103
Target:  5'- --cGGCaua--GGCCCAGGUCAGGCCc -3'
miRNA:   3'- gcuCCGgagugUCGGGUCCGGUCCGG- -5'
28955 3' -62.9 NC_006146.1 + 60622 0.72 0.305339
Target:  5'- cCGAGGCCaUCAUGGCagaCGGGgcucugCAGGCCa -3'
miRNA:   3'- -GCUCCGG-AGUGUCGg--GUCCg-----GUCCGG- -5'
28955 3' -62.9 NC_006146.1 + 146766 0.72 0.305339
Target:  5'- aGAGGCCgagUCACgcgacagguacaGGCCCGGuGCCAGccGCCc -3'
miRNA:   3'- gCUCCGG---AGUG------------UCGGGUC-CGGUC--CGG- -5'
28955 3' -62.9 NC_006146.1 + 42018 0.72 0.298687
Target:  5'- cCGAGcuacucCCUCugGGCCCGGGCuCAcGCCg -3'
miRNA:   3'- -GCUCc-----GGAGugUCGGGUCCG-GUcCGG- -5'
28955 3' -62.9 NC_006146.1 + 164462 0.72 0.298687
Target:  5'- uGGGGCCcCAUggaccccagGGCCCAcauGGCCcuGGGCCa -3'
miRNA:   3'- gCUCCGGaGUG---------UCGGGU---CCGG--UCCGG- -5'
28955 3' -62.9 NC_006146.1 + 157339 0.72 0.31898
Target:  5'- --cGGCCUgcuugCGCAGCCCGGcGCCcGGCg -3'
miRNA:   3'- gcuCCGGA-----GUGUCGGGUC-CGGuCCGg -5'
28955 3' -62.9 NC_006146.1 + 41612 0.72 0.292148
Target:  5'- gGGGGCUgguccgCugGGCCCGGGCgCAGaCCa -3'
miRNA:   3'- gCUCCGGa-----GugUCGGGUCCG-GUCcGG- -5'
28955 3' -62.9 NC_006146.1 + 48580 0.72 0.305339
Target:  5'- cCGGGGCCUCGgGGgUCAGGg-AGGCCa -3'
miRNA:   3'- -GCUCCGGAGUgUCgGGUCCggUCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.