miRNA display CGI


Results 101 - 120 of 562 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28955 3' -62.9 NC_006146.1 + 19867 0.71 0.355062
Target:  5'- --cGGCCUCuCGGguccaCCAGGCC-GGCCg -3'
miRNA:   3'- gcuCCGGAGuGUCg----GGUCCGGuCCGG- -5'
28955 3' -62.9 NC_006146.1 + 13711 0.71 0.355062
Target:  5'- --cGGCCUCuCGGguccaCCAGGCC-GGCCg -3'
miRNA:   3'- gcuCCGGAGuGUCg----GGUCCGGuCCGG- -5'
28955 3' -62.9 NC_006146.1 + 26022 0.71 0.355062
Target:  5'- --cGGCCUCuCGGguccaCCAGGCC-GGCCg -3'
miRNA:   3'- gcuCCGGAGuGUCg----GGUCCGGuCCGG- -5'
28955 3' -62.9 NC_006146.1 + 131069 0.71 0.355062
Target:  5'- --cGGCCcacugUGCGGCCgAGGCCgccGGGCCg -3'
miRNA:   3'- gcuCCGGa----GUGUCGGgUCCGG---UCCGG- -5'
28955 3' -62.9 NC_006146.1 + 29100 0.71 0.355062
Target:  5'- --cGGCCUCuCGGguccaCCAGGCC-GGCCg -3'
miRNA:   3'- gcuCCGGAGuGUCg----GGUCCGGuCCGG- -5'
28955 3' -62.9 NC_006146.1 + 117524 0.71 0.362615
Target:  5'- -uAGGUCUCAC-GCCUcucccucgGGGCCuGGGCCg -3'
miRNA:   3'- gcUCCGGAGUGuCGGG--------UCCGG-UCCGG- -5'
28955 3' -62.9 NC_006146.1 + 67313 0.71 0.325971
Target:  5'- -cGGGCCacguccgcgCugAGCCCGGcCCAGGCCc -3'
miRNA:   3'- gcUCCGGa--------GugUCGGGUCcGGUCCGG- -5'
28955 3' -62.9 NC_006146.1 + 109294 0.71 0.325971
Target:  5'- gGAGGgaUCuCGGCCCcGGCCGcGGCCg -3'
miRNA:   3'- gCUCCggAGuGUCGGGuCCGGU-CCGG- -5'
28955 3' -62.9 NC_006146.1 + 128274 0.71 0.340291
Target:  5'- uGAGGCC-CACGGCggcggccgagccCCAGGCUucGGUCa -3'
miRNA:   3'- gCUCCGGaGUGUCG------------GGUCCGGu-CCGG- -5'
28955 3' -62.9 NC_006146.1 + 77319 0.71 0.323862
Target:  5'- -cGGGUCgCGCAuGCCCAGGCUgauggugaaggacgAGGCCg -3'
miRNA:   3'- gcUCCGGaGUGU-CGGGUCCGG--------------UCCGG- -5'
28955 3' -62.9 NC_006146.1 + 64158 0.71 0.325971
Target:  5'- -aGGGCCUCGgAGUcugCCAGGCUGGGUg -3'
miRNA:   3'- gcUCCGGAGUgUCG---GGUCCGGUCCGg -5'
28955 3' -62.9 NC_006146.1 + 109392 0.71 0.362615
Target:  5'- gGAGGCCUCccugaucggACGGCCgucGGUCAgGGCCc -3'
miRNA:   3'- gCUCCGGAG---------UGUCGGgu-CCGGU-CCGG- -5'
28955 3' -62.9 NC_006146.1 + 20912 0.71 0.332359
Target:  5'- gGAGGCC-CugAGUCC-GGCCgaccugcAGGCCc -3'
miRNA:   3'- gCUCCGGaGugUCGGGuCCGG-------UCCGG- -5'
28955 3' -62.9 NC_006146.1 + 122664 0.71 0.325971
Target:  5'- gGGGGCCcuccgCGCGGCgcucacCCAGGCgcgcCAGGCCc -3'
miRNA:   3'- gCUCCGGa----GUGUCG------GGUCCG----GUCCGG- -5'
28955 3' -62.9 NC_006146.1 + 52818 0.71 0.340291
Target:  5'- aCGAGGCCgu---GCCCAGGaugcggaGGGCCg -3'
miRNA:   3'- -GCUCCGGaguguCGGGUCCgg-----UCCGG- -5'
28955 3' -62.9 NC_006146.1 + 74968 0.71 0.333075
Target:  5'- cCGGGGCCaguaCAgAGUCCAGaaGCgGGGCCa -3'
miRNA:   3'- -GCUCCGGa---GUgUCGGGUC--CGgUCCGG- -5'
28955 3' -62.9 NC_006146.1 + 128201 0.71 0.333075
Target:  5'- gGGGGCgC-CGCGGCgCCGGGCCAGacGCUc -3'
miRNA:   3'- gCUCCG-GaGUGUCG-GGUCCGGUC--CGG- -5'
28955 3' -62.9 NC_006146.1 + 89690 0.71 0.333075
Target:  5'- aGGGGCCcggggaACGGCCUgggauacacGGGuCCGGGCCu -3'
miRNA:   3'- gCUCCGGag----UGUCGGG---------UCC-GGUCCGG- -5'
28955 3' -62.9 NC_006146.1 + 163776 0.71 0.325267
Target:  5'- aGcAGGCCaUCcucuaguuaguauGCAGCCUGGGCCuuggcGGGCCa -3'
miRNA:   3'- gC-UCCGG-AG-------------UGUCGGGUCCGG-----UCCGG- -5'
28955 3' -62.9 NC_006146.1 + 9482 0.71 0.325971
Target:  5'- gCGGGGCCaCACccGCCU-GGCaCAGGCCu -3'
miRNA:   3'- -GCUCCGGaGUGu-CGGGuCCG-GUCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.