miRNA display CGI


Results 121 - 140 of 562 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28955 3' -62.9 NC_006146.1 + 78816 0.71 0.333075
Target:  5'- gGAGGCC-CACGcGUCCAGGCa--GCCg -3'
miRNA:   3'- gCUCCGGaGUGU-CGGGUCCGgucCGG- -5'
28955 3' -62.9 NC_006146.1 + 124108 0.71 0.333075
Target:  5'- aGAGGCCUUu--GCCCucgcgccGGCC-GGCCa -3'
miRNA:   3'- gCUCCGGAGuguCGGGu------CCGGuCCGG- -5'
28955 3' -62.9 NC_006146.1 + 125905 0.71 0.362615
Target:  5'- uGGGGCCUCACcgAGCUggagagaaGGGUCcGGCCa -3'
miRNA:   3'- gCUCCGGAGUG--UCGGg-------UCCGGuCCGG- -5'
28955 3' -62.9 NC_006146.1 + 118749 0.71 0.355062
Target:  5'- aCGAGGCCaacggCGCGGCuucgaCCuGGUgGGGCCc -3'
miRNA:   3'- -GCUCCGGa----GUGUCG-----GGuCCGgUCCGG- -5'
28955 3' -62.9 NC_006146.1 + 62832 0.71 0.355062
Target:  5'- gGAacCCUgGCcGCCguGGCCAGGCCg -3'
miRNA:   3'- gCUccGGAgUGuCGGguCCGGUCCGG- -5'
28955 3' -62.9 NC_006146.1 + 43716 0.71 0.355062
Target:  5'- -cAGGuCCUgGCGgauuuccuccGCCCGGGCCAGGUg -3'
miRNA:   3'- gcUCC-GGAgUGU----------CGGGUCCGGUCCGg -5'
28955 3' -62.9 NC_006146.1 + 125358 0.71 0.355062
Target:  5'- gGAGGCCagggCGgccaAGCCCaaggAGGcCCAGGCCc -3'
miRNA:   3'- gCUCCGGa---GUg---UCGGG----UCC-GGUCCGG- -5'
28955 3' -62.9 NC_006146.1 + 137719 0.71 0.34836
Target:  5'- gGAGGCCaggaccgagcggcggCGCGgcgguGCCCA-GCCGGGCCa -3'
miRNA:   3'- gCUCCGGa--------------GUGU-----CGGGUcCGGUCCGG- -5'
28955 3' -62.9 NC_006146.1 + 123639 0.71 0.347621
Target:  5'- -cAGGaCCUCGuCA-CCCGGGCCagGGGCCa -3'
miRNA:   3'- gcUCC-GGAGU-GUcGGGUCCGG--UCCGG- -5'
28955 3' -62.9 NC_006146.1 + 140847 0.71 0.346883
Target:  5'- uGAGGCCaauaaauuggaagUCACAaaucaCCUGGGCUGGGCCu -3'
miRNA:   3'- gCUCCGG-------------AGUGUc----GGGUCCGGUCCGG- -5'
28955 3' -62.9 NC_006146.1 + 39813 0.71 0.340291
Target:  5'- aCGGcGGCCguugACGGCCCGgcGGCCucGGCCg -3'
miRNA:   3'- -GCU-CCGGag--UGUCGGGU--CCGGu-CCGG- -5'
28955 3' -62.9 NC_006146.1 + 169272 0.7 0.410224
Target:  5'- cCGGGGCCUgGCGGgggCCAGcGCgGGGUCc -3'
miRNA:   3'- -GCUCCGGAgUGUCg--GGUC-CGgUCCGG- -5'
28955 3' -62.9 NC_006146.1 + 168340 0.7 0.410224
Target:  5'- cCGGGGCCUgGCGGgggCCAGcGCgGGGUCc -3'
miRNA:   3'- -GCUCCGGAgUGUCg--GGUC-CGgUCCGG- -5'
28955 3' -62.9 NC_006146.1 + 167408 0.7 0.410224
Target:  5'- cCGGGGCCUgGCGGgggCCAGcGCgGGGUCc -3'
miRNA:   3'- -GCUCCGGAgUGUCg--GGUC-CGgUCCGG- -5'
28955 3' -62.9 NC_006146.1 + 121146 0.7 0.410224
Target:  5'- --cGGCgUCugGGCCUGGGCCGcGcGCCc -3'
miRNA:   3'- gcuCCGgAGugUCGGGUCCGGU-C-CGG- -5'
28955 3' -62.9 NC_006146.1 + 159892 0.7 0.410224
Target:  5'- aGAgGGCCUCGaGGCCgGGGCCcucgaagaugggGGGCa -3'
miRNA:   3'- gCU-CCGGAGUgUCGGgUCCGG------------UCCGg -5'
28955 3' -62.9 NC_006146.1 + 155062 0.7 0.408575
Target:  5'- gGAGGUCUCuauccaaucgcuCGGCUCGauGCCGGGCCa -3'
miRNA:   3'- gCUCCGGAGu-----------GUCGGGUc-CGGUCCGG- -5'
28955 3' -62.9 NC_006146.1 + 48874 0.7 0.402022
Target:  5'- --cGGCCUCcaGGCgCCAGGCCuGcGCCu -3'
miRNA:   3'- gcuCCGGAGugUCG-GGUCCGGuC-CGG- -5'
28955 3' -62.9 NC_006146.1 + 45415 0.7 0.370279
Target:  5'- -uGGGCCagCGCgaGGCCCcGGCCGGGUUg -3'
miRNA:   3'- gcUCCGGa-GUG--UCGGGuCCGGUCCGG- -5'
28955 3' -62.9 NC_006146.1 + 170203 0.7 0.410224
Target:  5'- cCGGGGCCUgGCGGgggCCAGcGCgGGGUCc -3'
miRNA:   3'- -GCUCCGGAgUGUCg--GGUC-CGgUCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.