miRNA display CGI


Results 141 - 160 of 562 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28955 3' -62.9 NC_006146.1 + 92781 0.7 0.393925
Target:  5'- aGGGGCCUCuGCcuCUCAGGCUucccugucuuccGGGCCu -3'
miRNA:   3'- gCUCCGGAG-UGucGGGUCCGG------------UCCGG- -5'
28955 3' -62.9 NC_006146.1 + 28811 0.7 0.393925
Target:  5'- aGGGuGCCUCcCcgGGuCCCAGGCCAG-CCg -3'
miRNA:   3'- gCUC-CGGAGuG--UC-GGGUCCGGUCcGG- -5'
28955 3' -62.9 NC_006146.1 + 25733 0.7 0.393925
Target:  5'- aGGGuGCCUCcCcgGGuCCCAGGCCAG-CCg -3'
miRNA:   3'- gCUC-CGGAGuG--UC-GGGUCCGGUCcGG- -5'
28955 3' -62.9 NC_006146.1 + 22655 0.7 0.393925
Target:  5'- aGGGuGCCUCcCcgGGuCCCAGGCCAG-CCg -3'
miRNA:   3'- gCUC-CGGAGuG--UC-GGGUCCGGUCcGG- -5'
28955 3' -62.9 NC_006146.1 + 169272 0.7 0.410224
Target:  5'- cCGGGGCCUgGCGGgggCCAGcGCgGGGUCc -3'
miRNA:   3'- -GCUCCGGAgUGUCg--GGUC-CGgUCCGG- -5'
28955 3' -62.9 NC_006146.1 + 170203 0.7 0.410224
Target:  5'- cCGGGGCCUgGCGGgggCCAGcGCgGGGUCc -3'
miRNA:   3'- -GCUCCGGAgUGUCg--GGUC-CGgUCCGG- -5'
28955 3' -62.9 NC_006146.1 + 16499 0.7 0.393925
Target:  5'- aGGGuGCCUCcCcgGGuCCCAGGCCAG-CCg -3'
miRNA:   3'- gCUC-CGGAGuG--UC-GGGUCCGGUCcGG- -5'
28955 3' -62.9 NC_006146.1 + 45415 0.7 0.370279
Target:  5'- -uGGGCCagCGCgaGGCCCcGGCCGGGUUg -3'
miRNA:   3'- gcUCCGGa-GUG--UCGGGuCCGGUCCGG- -5'
28955 3' -62.9 NC_006146.1 + 44766 0.7 0.378052
Target:  5'- uCGGGGCCcgGCGGgcggggaaCCCAGGCCGGGg- -3'
miRNA:   3'- -GCUCCGGagUGUC--------GGGUCCGGUCCgg -5'
28955 3' -62.9 NC_006146.1 + 117233 0.7 0.37727
Target:  5'- -cGGGCUUCcuggaaaGCGGCCgGGGCCAGGg- -3'
miRNA:   3'- gcUCCGGAG-------UGUCGGgUCCGGUCCgg -5'
28955 3' -62.9 NC_006146.1 + 77217 0.7 0.378052
Target:  5'- uGGGGCaCUUcaACAGUCCGGGUCuaucugacGGCCa -3'
miRNA:   3'- gCUCCG-GAG--UGUCGGGUCCGGu-------CCGG- -5'
28955 3' -62.9 NC_006146.1 + 128058 0.7 0.378052
Target:  5'- gCGuGGGCCUgGCGGCCCucgAGGCCcugauccuGGUCu -3'
miRNA:   3'- -GC-UCCGGAgUGUCGGG---UCCGGu-------CCGG- -5'
28955 3' -62.9 NC_006146.1 + 130313 0.7 0.378052
Target:  5'- gGAGGUUcgGCcGCCCAgGGCCAGGaCCu -3'
miRNA:   3'- gCUCCGGagUGuCGGGU-CCGGUCC-GG- -5'
28955 3' -62.9 NC_006146.1 + 159277 0.7 0.378052
Target:  5'- aCGcGGGCCUCGgGGCCCucgcagucGGCaaacagGGGCCa -3'
miRNA:   3'- -GC-UCCGGAGUgUCGGGu-------CCGg-----UCCGG- -5'
28955 3' -62.9 NC_006146.1 + 31305 0.7 0.381192
Target:  5'- gGAGGCCUuCuccuccucgccccccGCAGCCUcauuGGGCuuaCAGGCCu -3'
miRNA:   3'- gCUCCGGA-G---------------UGUCGGG----UCCG---GUCCGG- -5'
28955 3' -62.9 NC_006146.1 + 4365 0.7 0.385935
Target:  5'- aCGuGGCC--ACGGCCCcgcGGGCucccCAGGCCg -3'
miRNA:   3'- -GCuCCGGagUGUCGGG---UCCG----GUCCGG- -5'
28955 3' -62.9 NC_006146.1 + 55396 0.7 0.378052
Target:  5'- cCGAGGCCagcaUCACGGCgUAGucgcccGCCGcGGCCu -3'
miRNA:   3'- -GCUCCGG----AGUGUCGgGUC------CGGU-CCGG- -5'
28955 3' -62.9 NC_006146.1 + 154983 0.7 0.391517
Target:  5'- --cGGCCUCGCgcagGGCCCGgcacagaaguugcuGGCUcgAGGCCa -3'
miRNA:   3'- gcuCCGGAGUG----UCGGGU--------------CCGG--UCCGG- -5'
28955 3' -62.9 NC_006146.1 + 13421 0.7 0.393925
Target:  5'- aGGGuGCCUCcCcgGGuCCCAGGCCAG-CCg -3'
miRNA:   3'- gCUC-CGGAGuG--UC-GGGUCCGGUCcGG- -5'
28955 3' -62.9 NC_006146.1 + 19577 0.7 0.393925
Target:  5'- aGGGuGCCUCcCcgGGuCCCAGGCCAG-CCg -3'
miRNA:   3'- gCUC-CGGAGuG--UC-GGGUCCGGUCcGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.