miRNA display CGI


Results 141 - 160 of 562 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28955 3' -62.9 NC_006146.1 + 145954 0.7 0.370279
Target:  5'- uGGGGCCUgGCcgGGUCUAagguGGCCuGGCCu -3'
miRNA:   3'- gCUCCGGAgUG--UCGGGU----CCGGuCCGG- -5'
28955 3' -62.9 NC_006146.1 + 53019 0.7 0.370279
Target:  5'- -uGGGCCUCACgcGGCU--GGCCGcGGCCg -3'
miRNA:   3'- gcUCCGGAGUG--UCGGguCCGGU-CCGG- -5'
28955 3' -62.9 NC_006146.1 + 158267 0.7 0.370279
Target:  5'- uGGGGCCUgGCcgGGUCUAagguGGCCuGGCCu -3'
miRNA:   3'- gCUCCGGAgUG--UCGGGU----CCGGuCCGG- -5'
28955 3' -62.9 NC_006146.1 + 117233 0.7 0.37727
Target:  5'- -cGGGCUUCcuggaaaGCGGCCgGGGCCAGGg- -3'
miRNA:   3'- gcUCCGGAG-------UGUCGGgUCCGGUCCgg -5'
28955 3' -62.9 NC_006146.1 + 14758 0.7 0.378052
Target:  5'- aCGAGGUCagGCAGgCgGGGCuCGGGCa -3'
miRNA:   3'- -GCUCCGGagUGUCgGgUCCG-GUCCGg -5'
28955 3' -62.9 NC_006146.1 + 115386 0.7 0.378052
Target:  5'- gGAGGCCcuggccgcUCgcgugcaggagGCAGCUgGcGGCCGGGCCu -3'
miRNA:   3'- gCUCCGG--------AG-----------UGUCGGgU-CCGGUCCGG- -5'
28955 3' -62.9 NC_006146.1 + 55396 0.7 0.378052
Target:  5'- cCGAGGCCagcaUCACGGCgUAGucgcccGCCGcGGCCu -3'
miRNA:   3'- -GCUCCGG----AGUGUCGgGUC------CGGU-CCGG- -5'
28955 3' -62.9 NC_006146.1 + 168482 0.7 0.378052
Target:  5'- --cGGCCUCAC-GUCCAcGGUCgggGGGCCg -3'
miRNA:   3'- gcuCCGGAGUGuCGGGU-CCGG---UCCGG- -5'
28955 3' -62.9 NC_006146.1 + 159277 0.7 0.378052
Target:  5'- aCGcGGGCCUCGgGGCCCucgcagucGGCaaacagGGGCCa -3'
miRNA:   3'- -GC-UCCGGAGUgUCGGGu-------CCGg-----UCCGG- -5'
28955 3' -62.9 NC_006146.1 + 130313 0.7 0.378052
Target:  5'- gGAGGUUcgGCcGCCCAgGGCCAGGaCCu -3'
miRNA:   3'- gCUCCGGagUGuCGGGU-CCGGUCC-GG- -5'
28955 3' -62.9 NC_006146.1 + 128058 0.7 0.378052
Target:  5'- gCGuGGGCCUgGCGGCCCucgAGGCCcugauccuGGUCu -3'
miRNA:   3'- -GC-UCCGGAgUGUCGGG---UCCGGu-------CCGG- -5'
28955 3' -62.9 NC_006146.1 + 77217 0.7 0.378052
Target:  5'- uGGGGCaCUUcaACAGUCCGGGUCuaucugacGGCCa -3'
miRNA:   3'- gCUCCG-GAG--UGUCGGGUCCGGu-------CCGG- -5'
28955 3' -62.9 NC_006146.1 + 44766 0.7 0.378052
Target:  5'- uCGGGGCCcgGCGGgcggggaaCCCAGGCCGGGg- -3'
miRNA:   3'- -GCUCCGGagUGUC--------GGGUCCGGUCCgg -5'
28955 3' -62.9 NC_006146.1 + 123125 0.7 0.378052
Target:  5'- aCGGGGCUUUcagACGGCCCuggAGGCCGuacucGCCa -3'
miRNA:   3'- -GCUCCGGAG---UGUCGGG---UCCGGUc----CGG- -5'
28955 3' -62.9 NC_006146.1 + 31305 0.7 0.381192
Target:  5'- gGAGGCCUuCuccuccucgccccccGCAGCCUcauuGGGCuuaCAGGCCu -3'
miRNA:   3'- gCUCCGGA-G---------------UGUCGGG----UCCG---GUCCGG- -5'
28955 3' -62.9 NC_006146.1 + 123348 0.7 0.385935
Target:  5'- aGGGGUCUCGCcgagggAGCUCuGGCgCuGGCCg -3'
miRNA:   3'- gCUCCGGAGUG------UCGGGuCCG-GuCCGG- -5'
28955 3' -62.9 NC_006146.1 + 41859 0.7 0.385935
Target:  5'- --cGGCgUCugGGCCCAGcUCGGGCUg -3'
miRNA:   3'- gcuCCGgAGugUCGGGUCcGGUCCGG- -5'
28955 3' -62.9 NC_006146.1 + 4365 0.7 0.385935
Target:  5'- aCGuGGCC--ACGGCCCcgcGGGCucccCAGGCCg -3'
miRNA:   3'- -GCuCCGGagUGUCGGG---UCCG----GUCCGG- -5'
28955 3' -62.9 NC_006146.1 + 154983 0.7 0.391517
Target:  5'- --cGGCCUCGCgcagGGCCCGgcacagaaguugcuGGCUcgAGGCCa -3'
miRNA:   3'- gcuCCGGAGUG----UCGGGU--------------CCGG--UCCGG- -5'
28955 3' -62.9 NC_006146.1 + 22655 0.7 0.393925
Target:  5'- aGGGuGCCUCcCcgGGuCCCAGGCCAG-CCg -3'
miRNA:   3'- gCUC-CGGAGuG--UC-GGGUCCGGUCcGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.