miRNA display CGI


Results 121 - 140 of 562 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28955 3' -62.9 NC_006146.1 + 118981 0.67 0.582581
Target:  5'- cCGGGGCCgcccgUCGguGCCUcggAGGCCcccGCCg -3'
miRNA:   3'- -GCUCCGG-----AGUguCGGG---UCCGGuc-CGG- -5'
28955 3' -62.9 NC_006146.1 + 170069 0.67 0.582581
Target:  5'- cCGGGGCCgCGCguggggauGGCCggcgggagGGGCCGGcGCCg -3'
miRNA:   3'- -GCUCCGGaGUG--------UCGGg-------UCCGGUC-CGG- -5'
28955 3' -62.9 NC_006146.1 + 85916 0.67 0.582581
Target:  5'- gCGGGGCUUUACc-CUgGGGCCuggauGGCCu -3'
miRNA:   3'- -GCUCCGGAGUGucGGgUCCGGu----CCGG- -5'
28955 3' -62.9 NC_006146.1 + 62410 0.67 0.582581
Target:  5'- aGAGGaCCUCGuCGG---AGGCCAGGCa -3'
miRNA:   3'- gCUCC-GGAGU-GUCgggUCCGGUCCGg -5'
28955 3' -62.9 NC_006146.1 + 20523 0.67 0.582581
Target:  5'- -cGGGCCUgucagACAGCCCugucuaGGGCCGGGa- -3'
miRNA:   3'- gcUCCGGAg----UGUCGGG------UCCGGUCCgg -5'
28955 3' -62.9 NC_006146.1 + 14367 0.67 0.582581
Target:  5'- -cGGGCCUgucagACAGCCCugucuaGGGCCGGGa- -3'
miRNA:   3'- gcUCCGGAg----UGUCGGG------UCCGGUCCgg -5'
28955 3' -62.9 NC_006146.1 + 53775 0.67 0.582581
Target:  5'- gGAGGUCUCGCcggacgagGGCCUcGGCCcgcgcGGCg -3'
miRNA:   3'- gCUCCGGAGUG--------UCGGGuCCGGu----CCGg -5'
28955 3' -62.9 NC_006146.1 + 138069 0.67 0.582581
Target:  5'- gGAGGCCgccgCAaGGaCgCCGGGCC-GGCUg -3'
miRNA:   3'- gCUCCGGa---GUgUC-G-GGUCCGGuCCGG- -5'
28955 3' -62.9 NC_006146.1 + 34239 0.67 0.582581
Target:  5'- gGAGGCCgccgCAaGGaCgCCGGGCC-GGCUg -3'
miRNA:   3'- gCUCCGGa---GUgUC-G-GGUCCGGuCCGG- -5'
28955 3' -62.9 NC_006146.1 + 17445 0.67 0.582581
Target:  5'- -cGGGCCUgucagACAGCCCugucuaGGGCCGGGa- -3'
miRNA:   3'- gcUCCGGAg----UGUCGGG------UCCGGUCCgg -5'
28955 3' -62.9 NC_006146.1 + 70840 0.67 0.582581
Target:  5'- --cGGCCUCAucuucCAGCCCucuucccGGCgCAGGUg -3'
miRNA:   3'- gcuCCGGAGU-----GUCGGGu------CCG-GUCCGg -5'
28955 3' -62.9 NC_006146.1 + 23601 0.67 0.582581
Target:  5'- -cGGGCCUgucagACAGCCCugucuaGGGCCGGGa- -3'
miRNA:   3'- gcUCCGGAg----UGUCGGG------UCCGGUCCgg -5'
28955 3' -62.9 NC_006146.1 + 74708 0.67 0.582581
Target:  5'- gGGGGgCUUAC-GCUCAgGGCCagaaAGGCCc -3'
miRNA:   3'- gCUCCgGAGUGuCGGGU-CCGG----UCCGG- -5'
28955 3' -62.9 NC_006146.1 + 73508 0.67 0.580649
Target:  5'- gCGGGGUCacgCGCAGgCUuacuuuuugcauGGCCAGGCUc -3'
miRNA:   3'- -GCUCCGGa--GUGUCgGGu-----------CCGGUCCGG- -5'
28955 3' -62.9 NC_006146.1 + 156027 0.67 0.572933
Target:  5'- uGGGGCCUCGgagGGCCUggaGGGCUAGaGUg -3'
miRNA:   3'- gCUCCGGAGUg--UCGGG---UCCGGUC-CGg -5'
28955 3' -62.9 NC_006146.1 + 146793 0.67 0.572933
Target:  5'- uGGGGCCUCGgagGGCCUggaGGGCUAGaGUg -3'
miRNA:   3'- gCUCCGGAGUg--UCGGG---UCCGGUC-CGg -5'
28955 3' -62.9 NC_006146.1 + 143715 0.67 0.572933
Target:  5'- uGGGGCCUCGgagGGCCUggaGGGCUAGaGUg -3'
miRNA:   3'- gCUCCGGAGUg--UCGGG---UCCGGUC-CGg -5'
28955 3' -62.9 NC_006146.1 + 108379 0.67 0.572933
Target:  5'- gGAGaCCgagacagaacaCGCAGCCCcccaGGGCCAGGUg -3'
miRNA:   3'- gCUCcGGa----------GUGUCGGG----UCCGGUCCGg -5'
28955 3' -62.9 NC_006146.1 + 149871 0.67 0.572933
Target:  5'- uGGGGCCUCGgagGGCCUggaGGGCUAGaGUg -3'
miRNA:   3'- gCUCCGGAGUg--UCGGG---UCCGGUC-CGg -5'
28955 3' -62.9 NC_006146.1 + 126190 0.67 0.572933
Target:  5'- -cAGGCCggcCAGCggGGGCCAcGGCCa -3'
miRNA:   3'- gcUCCGGaguGUCGggUCCGGU-CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.