miRNA display CGI


Results 101 - 120 of 562 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28955 3' -62.9 NC_006146.1 + 25762 0.67 0.534773
Target:  5'- gGAGGgacCCcgGCAGCCCGgguGGCCccagAGGCCa -3'
miRNA:   3'- gCUCC---GGagUGUCGGGU---CCGG----UCCGG- -5'
28955 3' -62.9 NC_006146.1 + 26022 0.71 0.355062
Target:  5'- --cGGCCUCuCGGguccaCCAGGCC-GGCCg -3'
miRNA:   3'- gcuCCGGAGuGUCg----GGUCCGGuCCGG- -5'
28955 3' -62.9 NC_006146.1 + 26679 0.67 0.582581
Target:  5'- -cGGGCCUgucagACAGCCCugucuaGGGCCGGGa- -3'
miRNA:   3'- gcUCCGGAg----UGUCGGG------UCCGGUCCgg -5'
28955 3' -62.9 NC_006146.1 + 26862 0.66 0.601969
Target:  5'- uGAGcccCCUCGCAGauCCCAGugaagaagagcGCCGGGUCg -3'
miRNA:   3'- gCUCc--GGAGUGUC--GGGUC-----------CGGUCCGG- -5'
28955 3' -62.9 NC_006146.1 + 26978 0.66 0.591293
Target:  5'- --uGGUaaaugUCAgGGCCCAGggggguucgcguuGCCAGGCCa -3'
miRNA:   3'- gcuCCGg----AGUgUCGGGUC-------------CGGUCCGG- -5'
28955 3' -62.9 NC_006146.1 + 27165 0.68 0.505827
Target:  5'- aGGGGucuucuaCCUCACucuAGCCCuccAGGCCcuccgAGGCCc -3'
miRNA:   3'- gCUCC-------GGAGUG---UCGGG---UCCGG-----UCCGG- -5'
28955 3' -62.9 NC_006146.1 + 27336 0.68 0.488421
Target:  5'- --cGGaCCUUccaGGCCCGGGCCcccaggucucGGGCCa -3'
miRNA:   3'- gcuCC-GGAGug-UCGGGUCCGG----------UCCGG- -5'
28955 3' -62.9 NC_006146.1 + 27699 0.68 0.479374
Target:  5'- aGucGCCUCAa--CCCGGGCUucAGGCCc -3'
miRNA:   3'- gCucCGGAGUgucGGGUCCGG--UCCGG- -5'
28955 3' -62.9 NC_006146.1 + 27850 0.67 0.534773
Target:  5'- cCGGGGCCUUucaGGCCC---UCGGGCCc -3'
miRNA:   3'- -GCUCCGGAGug-UCGGGuccGGUCCGG- -5'
28955 3' -62.9 NC_006146.1 + 28001 1.11 0.000537
Target:  5'- uCGAGGCCUCACAGCCCAGGCCAGGCCa -3'
miRNA:   3'- -GCUCCGGAGUGUCGGGUCCGGUCCGG- -5'
28955 3' -62.9 NC_006146.1 + 28101 0.73 0.249497
Target:  5'- aGAGGCC-CGCGGCCauugGGGCCAGcaagcgagaccaGCCc -3'
miRNA:   3'- gCUCCGGaGUGUCGGg---UCCGGUC------------CGG- -5'
28955 3' -62.9 NC_006146.1 + 28255 0.69 0.418529
Target:  5'- gCGAGGCUggGUGGCUgggCAGGCCGGGUCu -3'
miRNA:   3'- -GCUCCGGagUGUCGG---GUCCGGUCCGG- -5'
28955 3' -62.9 NC_006146.1 + 28811 0.7 0.393925
Target:  5'- aGGGuGCCUCcCcgGGuCCCAGGCCAG-CCg -3'
miRNA:   3'- gCUC-CGGAGuG--UC-GGGUCCGGUCcGG- -5'
28955 3' -62.9 NC_006146.1 + 28840 0.67 0.534773
Target:  5'- gGAGGgacCCcgGCAGCCCGgguGGCCccagAGGCCa -3'
miRNA:   3'- gCUCC---GGagUGUCGGGU---CCGG----UCCGG- -5'
28955 3' -62.9 NC_006146.1 + 29100 0.71 0.355062
Target:  5'- --cGGCCUCuCGGguccaCCAGGCC-GGCCg -3'
miRNA:   3'- gcuCCGGAGuGUCg----GGUCCGGuCCGG- -5'
28955 3' -62.9 NC_006146.1 + 31305 0.7 0.381192
Target:  5'- gGAGGCCUuCuccuccucgccccccGCAGCCUcauuGGGCuuaCAGGCCu -3'
miRNA:   3'- gCUCCGGA-G---------------UGUCGGG----UCCG---GUCCGG- -5'
28955 3' -62.9 NC_006146.1 + 31602 0.66 0.601969
Target:  5'- -cAGGCUgaCACcacgggggaugGGCUCaAGGCCGGGCCc -3'
miRNA:   3'- gcUCCGGa-GUG-----------UCGGG-UCCGGUCCGG- -5'
28955 3' -62.9 NC_006146.1 + 31671 0.66 0.601969
Target:  5'- -cAGGCaa-ACAGCCCAGGgaCCAGGg- -3'
miRNA:   3'- gcUCCGgagUGUCGGGUCC--GGUCCgg -5'
28955 3' -62.9 NC_006146.1 + 31951 0.68 0.516026
Target:  5'- -aAGGCCaaaGCcaGGgCCAGGUUAGGCCa -3'
miRNA:   3'- gcUCCGGag-UG--UCgGGUCCGGUCCGG- -5'
28955 3' -62.9 NC_006146.1 + 32022 0.73 0.254679
Target:  5'- aGGGGCCUCGggacgaggcgcUGGCCCAGGucaugacCCGGGCg -3'
miRNA:   3'- gCUCCGGAGU-----------GUCGGGUCC-------GGUCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.