miRNA display CGI


Results 141 - 160 of 562 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28955 3' -62.9 NC_006146.1 + 34869 0.66 0.621438
Target:  5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3'
miRNA:   3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5'
28955 3' -62.9 NC_006146.1 + 34961 0.66 0.621438
Target:  5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3'
miRNA:   3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5'
28955 3' -62.9 NC_006146.1 + 35054 0.66 0.621438
Target:  5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3'
miRNA:   3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5'
28955 3' -62.9 NC_006146.1 + 35147 0.66 0.621438
Target:  5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3'
miRNA:   3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5'
28955 3' -62.9 NC_006146.1 + 35240 0.66 0.621438
Target:  5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3'
miRNA:   3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5'
28955 3' -62.9 NC_006146.1 + 35333 0.66 0.621438
Target:  5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3'
miRNA:   3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5'
28955 3' -62.9 NC_006146.1 + 35426 0.66 0.621438
Target:  5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3'
miRNA:   3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5'
28955 3' -62.9 NC_006146.1 + 35519 0.66 0.621438
Target:  5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3'
miRNA:   3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5'
28955 3' -62.9 NC_006146.1 + 35612 0.66 0.621438
Target:  5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3'
miRNA:   3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5'
28955 3' -62.9 NC_006146.1 + 35705 0.66 0.621438
Target:  5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3'
miRNA:   3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5'
28955 3' -62.9 NC_006146.1 + 37691 0.67 0.534773
Target:  5'- aCGAGGCaa-GgAGCCCAGGUgAGaCCu -3'
miRNA:   3'- -GCUCCGgagUgUCGGGUCCGgUCcGG- -5'
28955 3' -62.9 NC_006146.1 + 37855 0.68 0.519755
Target:  5'- aGuGGCCggcgaccagauaggCAUAGagCAGGCCGGGCUg -3'
miRNA:   3'- gCuCCGGa-------------GUGUCggGUCCGGUCCGG- -5'
28955 3' -62.9 NC_006146.1 + 38042 0.68 0.470409
Target:  5'- -cAGaCCUCACagugggAGCCCAGaGUCAGGCUg -3'
miRNA:   3'- gcUCcGGAGUG------UCGGGUC-CGGUCCGG- -5'
28955 3' -62.9 NC_006146.1 + 39077 0.72 0.31898
Target:  5'- --cGGCCUC-CGGUCUggggaAGGCCAgGGCCa -3'
miRNA:   3'- gcuCCGGAGuGUCGGG-----UCCGGU-CCGG- -5'
28955 3' -62.9 NC_006146.1 + 39308 0.68 0.516026
Target:  5'- aGAGGCCUguguaCugGGCUC-GGCU-GGCCu -3'
miRNA:   3'- gCUCCGGA-----GugUCGGGuCCGGuCCGG- -5'
28955 3' -62.9 NC_006146.1 + 39813 0.71 0.340291
Target:  5'- aCGGcGGCCguugACGGCCCGgcGGCCucGGCCg -3'
miRNA:   3'- -GCU-CCGGag--UGUCGGGU--CCGGu-CCGG- -5'
28955 3' -62.9 NC_006146.1 + 39986 0.68 0.506751
Target:  5'- uGAGGCUgcuGCGGCCCGuaguGGCCGGuGUg -3'
miRNA:   3'- gCUCCGGag-UGUCGGGU----CCGGUC-CGg -5'
28955 3' -62.9 NC_006146.1 + 40302 0.68 0.525368
Target:  5'- aGAGGCCggGCAGgCCaaaguAGGCCGGaggaggguaGCCg -3'
miRNA:   3'- gCUCCGGagUGUCgGG-----UCCGGUC---------CGG- -5'
28955 3' -62.9 NC_006146.1 + 40720 0.69 0.426935
Target:  5'- -cGGGUCUCA-GGUCCGGGCaggCGGGCCc -3'
miRNA:   3'- gcUCCGGAGUgUCGGGUCCG---GUCCGG- -5'
28955 3' -62.9 NC_006146.1 + 40863 0.73 0.26054
Target:  5'- gGAGGCCcggcUCGCGGUCCGGagacggaGCCGgGGCCu -3'
miRNA:   3'- gCUCCGG----AGUGUCGGGUC-------CGGU-CCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.