miRNA display CGI


Results 101 - 120 of 562 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28955 3' -62.9 NC_006146.1 + 145129 0.68 0.525368
Target:  5'- --uGGCCUCugGGgccaCCCGGGCUgccgGGGUCc -3'
miRNA:   3'- gcuCCGGAGugUC----GGGUCCGG----UCCGG- -5'
28955 3' -62.9 NC_006146.1 + 144056 0.68 0.525368
Target:  5'- aGGGGgCUCACAGUC--GGCuCGGGCa -3'
miRNA:   3'- gCUCCgGAGUGUCGGguCCG-GUCCGg -5'
28955 3' -62.9 NC_006146.1 + 143715 0.67 0.572933
Target:  5'- uGGGGCCUCGgagGGCCUggaGGGCUAGaGUg -3'
miRNA:   3'- gCUCCGGAGUg--UCGGG---UCCGGUC-CGg -5'
28955 3' -62.9 NC_006146.1 + 143559 0.72 0.31898
Target:  5'- cCGAGaCCUgGgGGCCCGGGCCuggaAGGUCc -3'
miRNA:   3'- -GCUCcGGAgUgUCGGGUCCGG----UCCGG- -5'
28955 3' -62.9 NC_006146.1 + 143201 0.66 0.621438
Target:  5'- -cGGGCCUga-AGCCCGGGUUgAGGCg -3'
miRNA:   3'- gcUCCGGAgugUCGGGUCCGG-UCCGg -5'
28955 3' -62.9 NC_006146.1 + 142915 0.72 0.305339
Target:  5'- uGAGGCCUCGaGGgCCGGGUUcuGGGCUu -3'
miRNA:   3'- gCUCCGGAGUgUCgGGUCCGG--UCCGG- -5'
28955 3' -62.9 NC_006146.1 + 142876 0.7 0.370279
Target:  5'- uGGGGCCUgGCcgGGUCUAagguGGCCuGGCCu -3'
miRNA:   3'- gCUCCGGAgUG--UCGGGU----CCGGuCCGG- -5'
28955 3' -62.9 NC_006146.1 + 142789 0.69 0.46153
Target:  5'- --uGGUCUCGCuugcuGGCCCcaauGGCCgcGGGCCu -3'
miRNA:   3'- gcuCCGGAGUG-----UCGGGu---CCGG--UCCGG- -5'
28955 3' -62.9 NC_006146.1 + 142611 0.67 0.572933
Target:  5'- uGAGGUC-CGCAuGCCCAauCCuGGCCu -3'
miRNA:   3'- gCUCCGGaGUGU-CGGGUccGGuCCGG- -5'
28955 3' -62.9 NC_006146.1 + 142543 0.73 0.273205
Target:  5'- gGAGGUgguugcggUGCAGCCUAGGCUAGGCg -3'
miRNA:   3'- gCUCCGga------GUGUCGGGUCCGGUCCGg -5'
28955 3' -62.9 NC_006146.1 + 142335 0.8 0.089979
Target:  5'- gCGAGGCCggGCAGgCCGGGC-AGGCCg -3'
miRNA:   3'- -GCUCCGGagUGUCgGGUCCGgUCCGG- -5'
28955 3' -62.9 NC_006146.1 + 142142 0.66 0.601969
Target:  5'- aGGGGCC-CugGGCCCcgAGGgC-GGCUc -3'
miRNA:   3'- gCUCCGGaGugUCGGG--UCCgGuCCGG- -5'
28955 3' -62.9 NC_006146.1 + 142051 0.68 0.525368
Target:  5'- --uGGCCUCugGGgccaCCCGGGCUgccgGGGUCc -3'
miRNA:   3'- gcuCCGGAGugUC----GGGUCCGG----UCCGG- -5'
28955 3' -62.9 NC_006146.1 + 140847 0.71 0.346883
Target:  5'- uGAGGCCaauaaauuggaagUCACAaaucaCCUGGGCUGGGCCu -3'
miRNA:   3'- gCUCCGG-------------AGUGUc----GGGUCCGGUCCGG- -5'
28955 3' -62.9 NC_006146.1 + 139682 0.67 0.563322
Target:  5'- aGGGGcCCUCAguGUgCCAGGCUugugguuaAGGUCc -3'
miRNA:   3'- gCUCC-GGAGUguCG-GGUCCGG--------UCCGG- -5'
28955 3' -62.9 NC_006146.1 + 139571 0.66 0.611697
Target:  5'- uGAGGCCUguaAGCCCaaugAGGCUgcgggGGGCg -3'
miRNA:   3'- gCUCCGGAgugUCGGG----UCCGG-----UCCGg -5'
28955 3' -62.9 NC_006146.1 + 139042 0.67 0.531004
Target:  5'- aGAGGCCUUggaacggguaacugGCGGCCaccauaCGGGCCcugguggcgcgggGGGCUg -3'
miRNA:   3'- gCUCCGGAG--------------UGUCGG------GUCCGG-------------UCCGG- -5'
28955 3' -62.9 NC_006146.1 + 138069 0.67 0.582581
Target:  5'- gGAGGCCgccgCAaGGaCgCCGGGCC-GGCUg -3'
miRNA:   3'- gCUCCGGa---GUgUC-G-GGUCCGGuCCGG- -5'
28955 3' -62.9 NC_006146.1 + 137963 0.68 0.506751
Target:  5'- gGAGGa-UCGCGG-CCGGGCCucccggGGGCCc -3'
miRNA:   3'- gCUCCggAGUGUCgGGUCCGG------UCCGG- -5'
28955 3' -62.9 NC_006146.1 + 137846 0.68 0.523494
Target:  5'- gGGGGgCUCGgGGugggugggcguguCCCGGGCCccgccccGGGCCg -3'
miRNA:   3'- gCUCCgGAGUgUC-------------GGGUCCGG-------UCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.