Results 121 - 140 of 562 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28955 | 3' | -62.9 | NC_006146.1 | + | 137777 | 0.69 | 0.417694 |
Target: 5'- gCGGGGCa--GCGGCCCGGcgaacccGCCGgcGGCCa -3' miRNA: 3'- -GCUCCGgagUGUCGGGUC-------CGGU--CCGG- -5' |
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28955 | 3' | -62.9 | NC_006146.1 | + | 137719 | 0.71 | 0.34836 |
Target: 5'- gGAGGCCaggaccgagcggcggCGCGgcgguGCCCA-GCCGGGCCa -3' miRNA: 3'- gCUCCGGa--------------GUGU-----CGGGUcCGGUCCGG- -5' |
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28955 | 3' | -62.9 | NC_006146.1 | + | 137654 | 0.69 | 0.417694 |
Target: 5'- gCGGGGCa--GCGGCCCGGcggacccGCCGgcGGCCa -3' miRNA: 3'- -GCUCCGgagUGUCGGGUC-------CGGU--CCGG- -5' |
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28955 | 3' | -62.9 | NC_006146.1 | + | 137611 | 0.68 | 0.470409 |
Target: 5'- gCGGcGGCgcagCGguGCCCA-GCCGGGCCa -3' miRNA: 3'- -GCU-CCGga--GUguCGGGUcCGGUCCGG- -5' |
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28955 | 3' | -62.9 | NC_006146.1 | + | 137573 | 0.66 | 0.639962 |
Target: 5'- -cGGGUC-CGCugcccgguccuggAGCUCGGGCCggGGGCCg -3' miRNA: 3'- gcUCCGGaGUG-------------UCGGGUCCGG--UCCGG- -5' |
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28955 | 3' | -62.9 | NC_006146.1 | + | 137532 | 0.67 | 0.541393 |
Target: 5'- gCGGGGCa--GCGGCCCGgcggacccaccggcGGCCAcccGGCUg -3' miRNA: 3'- -GCUCCGgagUGUCGGGU--------------CCGGU---CCGG- -5' |
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28955 | 3' | -62.9 | NC_006146.1 | + | 137513 | 0.68 | 0.523494 |
Target: 5'- gGGGGCCgggugccccugggucCGCuGCCCcgcuccggcgggggGuGGCCGGGCCg -3' miRNA: 3'- gCUCCGGa--------------GUGuCGGG--------------U-CCGGUCCGG- -5' |
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28955 | 3' | -62.9 | NC_006146.1 | + | 137489 | 0.68 | 0.470409 |
Target: 5'- gCGGcGGCgcagCGguGCCCAGGC-GGGCCa -3' miRNA: 3'- -GCU-CCGga--GUguCGGGUCCGgUCCGG- -5' |
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28955 | 3' | -62.9 | NC_006146.1 | + | 137420 | 0.68 | 0.523494 |
Target: 5'- gGGGGCCgggugccccugggucCGCuGCCCcgcuccggcgggggGuGGCCGGGCCg -3' miRNA: 3'- gCUCCGGa--------------GUGuCGGG--------------U-CCGGUCCGG- -5' |
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28955 | 3' | -62.9 | NC_006146.1 | + | 137327 | 0.68 | 0.523494 |
Target: 5'- gGGGGCCgggugccccugggucCGCuGCCCcgcuccggcgggggGuGGCCGGGCCg -3' miRNA: 3'- gCUCCGGa--------------GUGuCGGG--------------U-CCGGUCCGG- -5' |
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28955 | 3' | -62.9 | NC_006146.1 | + | 137234 | 0.68 | 0.523494 |
Target: 5'- gGGGGCCgggugccccugggucCGCuGCCCcgcuccggcgggggGuGGCCGGGCCg -3' miRNA: 3'- gCUCCGGa--------------GUGuCGGG--------------U-CCGGUCCGG- -5' |
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28955 | 3' | -62.9 | NC_006146.1 | + | 137141 | 0.68 | 0.523494 |
Target: 5'- gGGGGCCgggugccccugggucCGCuGCCCcgcuccggcgggggGuGGCCGGGCCg -3' miRNA: 3'- gCUCCGGa--------------GUGuCGGG--------------U-CCGGUCCGG- -5' |
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28955 | 3' | -62.9 | NC_006146.1 | + | 137048 | 0.68 | 0.523494 |
Target: 5'- gGGGGCCgggugccccugggucCGCuGCCCcgcuccggcgggggGuGGCCGGGCCg -3' miRNA: 3'- gCUCCGGa--------------GUGuCGGG--------------U-CCGGUCCGG- -5' |
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28955 | 3' | -62.9 | NC_006146.1 | + | 137015 | 0.66 | 0.591293 |
Target: 5'- gGuAGGCCgggCACAcCCCggggaggAGGCCGGGUg -3' miRNA: 3'- gC-UCCGGa--GUGUcGGG-------UCCGGUCCGg -5' |
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28955 | 3' | -62.9 | NC_006146.1 | + | 136955 | 0.68 | 0.523494 |
Target: 5'- gGGGGCCgggugccccugggucCGCuGCCCcgcuccggcgggggGuGGCCGGGCCg -3' miRNA: 3'- gCUCCGGa--------------GUGuCGGG--------------U-CCGGUCCGG- -5' |
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28955 | 3' | -62.9 | NC_006146.1 | + | 136862 | 0.68 | 0.523494 |
Target: 5'- gGGGGCCgggugccccugggucCGCuGCCCcgcuccggcgggggGuGGCCGGGCCg -3' miRNA: 3'- gCUCCGGa--------------GUGuCGGG--------------U-CCGGUCCGG- -5' |
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28955 | 3' | -62.9 | NC_006146.1 | + | 136769 | 0.68 | 0.523494 |
Target: 5'- gGGGGCCgggugccccugggucCGCuGCCCcgcuccggcgggggGuGGCCGGGCCg -3' miRNA: 3'- gCUCCGGa--------------GUGuCGGG--------------U-CCGGUCCGG- -5' |
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28955 | 3' | -62.9 | NC_006146.1 | + | 136584 | 0.68 | 0.523494 |
Target: 5'- gGGGGCCgggugccccugggucCGCuGCCCcgcuccggcgggggGuGGCCGGGCCg -3' miRNA: 3'- gCUCCGGa--------------GUGuCGGG--------------U-CCGGUCCGG- -5' |
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28955 | 3' | -62.9 | NC_006146.1 | + | 136491 | 0.68 | 0.523494 |
Target: 5'- gGGGGCCgggugccccugggucCGCuGCCCcgcuccggcgggggGuGGCCGGGCCg -3' miRNA: 3'- gCUCCGGa--------------GUGuCGGG--------------U-CCGGUCCGG- -5' |
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28955 | 3' | -62.9 | NC_006146.1 | + | 136398 | 0.68 | 0.523494 |
Target: 5'- gGGGGCCgggugccccugggucCGCuGCCCcgcuccggcgggggGuGGCCGGGCCg -3' miRNA: 3'- gCUCCGGa--------------GUGuCGGG--------------U-CCGGUCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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