miRNA display CGI


Results 141 - 160 of 562 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28955 3' -62.9 NC_006146.1 + 13711 0.71 0.355062
Target:  5'- --cGGCCUCuCGGguccaCCAGGCC-GGCCg -3'
miRNA:   3'- gcuCCGGAGuGUCg----GGUCCGGuCCGG- -5'
28955 3' -62.9 NC_006146.1 + 128274 0.71 0.340291
Target:  5'- uGAGGCC-CACGGCggcggccgagccCCAGGCUucGGUCa -3'
miRNA:   3'- gCUCCGGaGUGUCG------------GGUCCGGu-CCGG- -5'
28955 3' -62.9 NC_006146.1 + 47744 0.72 0.312103
Target:  5'- cCGGGGCCUCcucGCGcGCCCuGGCgAguacGGCCu -3'
miRNA:   3'- -GCUCCGGAG---UGU-CGGGuCCGgU----CCGG- -5'
28955 3' -62.9 NC_006146.1 + 98974 0.72 0.312103
Target:  5'- --cGGCaua--GGCCCAGGUCAGGCCc -3'
miRNA:   3'- gcuCCGgagugUCGGGUCCGGUCCGG- -5'
28955 3' -62.9 NC_006146.1 + 60622 0.72 0.305339
Target:  5'- cCGAGGCCaUCAUGGCagaCGGGgcucugCAGGCCa -3'
miRNA:   3'- -GCUCCGG-AGUGUCGg--GUCCg-----GUCCGG- -5'
28955 3' -62.9 NC_006146.1 + 48580 0.72 0.305339
Target:  5'- cCGGGGCCUCGgGGgUCAGGg-AGGCCa -3'
miRNA:   3'- -GCUCCGGAGUgUCgGGUCCggUCCGG- -5'
28955 3' -62.9 NC_006146.1 + 146766 0.72 0.305339
Target:  5'- aGAGGCCgagUCACgcgacagguacaGGCCCGGuGCCAGccGCCc -3'
miRNA:   3'- gCUCCGG---AGUG------------UCGGGUC-CGGUC--CGG- -5'
28955 3' -62.9 NC_006146.1 + 42018 0.72 0.298687
Target:  5'- cCGAGcuacucCCUCugGGCCCGGGCuCAcGCCg -3'
miRNA:   3'- -GCUCc-----GGAGugUCGGGUCCG-GUcCGG- -5'
28955 3' -62.9 NC_006146.1 + 164462 0.72 0.298687
Target:  5'- uGGGGCCcCAUggaccccagGGCCCAcauGGCCcuGGGCCa -3'
miRNA:   3'- gCUCCGGaGUG---------UCGGGU---CCGG--UCCGG- -5'
28955 3' -62.9 NC_006146.1 + 41612 0.72 0.292148
Target:  5'- gGGGGCUgguccgCugGGCCCGGGCgCAGaCCa -3'
miRNA:   3'- gCUCCGGa-----GugUCGGGUCCG-GUCcGG- -5'
28955 3' -62.9 NC_006146.1 + 39077 0.72 0.31898
Target:  5'- --cGGCCUC-CGGUCUggggaAGGCCAgGGCCa -3'
miRNA:   3'- gcuCCGGAGuGUCGGG-----UCCGGU-CCGG- -5'
28955 3' -62.9 NC_006146.1 + 157339 0.72 0.31898
Target:  5'- --cGGCCUgcuugCGCAGCCCGGcGCCcGGCg -3'
miRNA:   3'- gcuCCGGA-----GUGUCGGGUC-CGGuCCGg -5'
28955 3' -62.9 NC_006146.1 + 52818 0.71 0.340291
Target:  5'- aCGAGGCCgu---GCCCAGGaugcggaGGGCCg -3'
miRNA:   3'- -GCUCCGGaguguCGGGUCCgg-----UCCGG- -5'
28955 3' -62.9 NC_006146.1 + 74968 0.71 0.333075
Target:  5'- cCGGGGCCaguaCAgAGUCCAGaaGCgGGGCCa -3'
miRNA:   3'- -GCUCCGGa---GUgUCGGGUC--CGgUCCGG- -5'
28955 3' -62.9 NC_006146.1 + 128201 0.71 0.333075
Target:  5'- gGGGGCgC-CGCGGCgCCGGGCCAGacGCUc -3'
miRNA:   3'- gCUCCG-GaGUGUCG-GGUCCGGUC--CGG- -5'
28955 3' -62.9 NC_006146.1 + 89690 0.71 0.333075
Target:  5'- aGGGGCCcggggaACGGCCUgggauacacGGGuCCGGGCCu -3'
miRNA:   3'- gCUCCGGag----UGUCGGG---------UCC-GGUCCGG- -5'
28955 3' -62.9 NC_006146.1 + 109294 0.71 0.325971
Target:  5'- gGAGGgaUCuCGGCCCcGGCCGcGGCCg -3'
miRNA:   3'- gCUCCggAGuGUCGGGuCCGGU-CCGG- -5'
28955 3' -62.9 NC_006146.1 + 67313 0.71 0.325971
Target:  5'- -cGGGCCacguccgcgCugAGCCCGGcCCAGGCCc -3'
miRNA:   3'- gcUCCGGa--------GugUCGGGUCcGGUCCGG- -5'
28955 3' -62.9 NC_006146.1 + 9482 0.71 0.325971
Target:  5'- gCGGGGCCaCACccGCCU-GGCaCAGGCCu -3'
miRNA:   3'- -GCUCCGGaGUGu-CGGGuCCG-GUCCGG- -5'
28955 3' -62.9 NC_006146.1 + 163776 0.71 0.325267
Target:  5'- aGcAGGCCaUCcucuaguuaguauGCAGCCUGGGCCuuggcGGGCCa -3'
miRNA:   3'- gC-UCCGG-AG-------------UGUCGGGUCCGG-----UCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.