miRNA display CGI


Results 61 - 80 of 562 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28955 3' -62.9 NC_006146.1 + 142915 0.72 0.305339
Target:  5'- uGAGGCCUCGaGGgCCGGGUUcuGGGCUu -3'
miRNA:   3'- gCUCCGGAGUgUCgGGUCCGG--UCCGG- -5'
28955 3' -62.9 NC_006146.1 + 158306 0.72 0.305339
Target:  5'- uGAGGCCUCGaGGgCCGGGUUcuGGGCUu -3'
miRNA:   3'- gCUCCGGAGUgUCgGGUCCGG--UCCGG- -5'
28955 3' -62.9 NC_006146.1 + 154647 0.8 0.089979
Target:  5'- gCGAGGCCggGCAGgCCGGGC-AGGCCg -3'
miRNA:   3'- -GCUCCGGagUGUCgGGUCCGgUCCGG- -5'
28955 3' -62.9 NC_006146.1 + 584 0.79 0.110021
Target:  5'- aGGGGCCgggggCGCGGCCCGGcGCCAGcCCu -3'
miRNA:   3'- gCUCCGGa----GUGUCGGGUC-CGGUCcGG- -5'
28955 3' -62.9 NC_006146.1 + 117775 0.79 0.112803
Target:  5'- gGAGGCaaccgUCGCGcuccCCCGGGCCGGGCCg -3'
miRNA:   3'- gCUCCGg----AGUGUc---GGGUCCGGUCCGG- -5'
28955 3' -62.9 NC_006146.1 + 23467 0.75 0.207192
Target:  5'- aCGAGGCC-C-UGGCCguGGCCAGGUa -3'
miRNA:   3'- -GCUCCGGaGuGUCGGguCCGGUCCGg -5'
28955 3' -62.9 NC_006146.1 + 129048 0.74 0.227514
Target:  5'- aCGAGGCCccggUAGCCCcuGGCCAcGGCCc -3'
miRNA:   3'- -GCUCCGGagu-GUCGGGu-CCGGU-CCGG- -5'
28955 3' -62.9 NC_006146.1 + 42292 0.73 0.243842
Target:  5'- gGAGGCCagGUAGCCCAGcGCCAGaaaguacaGCCg -3'
miRNA:   3'- gCUCCGGagUGUCGGGUC-CGGUC--------CGG- -5'
28955 3' -62.9 NC_006146.1 + 40863 0.73 0.26054
Target:  5'- gGAGGCCcggcUCGCGGUCCGGagacggaGCCGgGGCCu -3'
miRNA:   3'- gCUCCGG----AGUGUCGGGUC-------CGGU-CCGG- -5'
28955 3' -62.9 NC_006146.1 + 115134 0.72 0.279408
Target:  5'- gGuGGCCUCGCuGCCCcuGGCCc-GCCg -3'
miRNA:   3'- gCuCCGGAGUGuCGGGu-CCGGucCGG- -5'
28955 3' -62.9 NC_006146.1 + 71914 0.7 0.393925
Target:  5'- gCGcGGCCUCugA-CCUGGGCCugaccuGGGCCu -3'
miRNA:   3'- -GCuCCGGAGugUcGGGUCCGG------UCCGG- -5'
28955 3' -62.9 NC_006146.1 + 72343 0.7 0.393925
Target:  5'- uGAGGCCuUCGCuugGGCCCuGGaCC-GGCUg -3'
miRNA:   3'- gCUCCGG-AGUG---UCGGGuCC-GGuCCGG- -5'
28955 3' -62.9 NC_006146.1 + 146637 0.72 0.31898
Target:  5'- cCGAGaCCUgGgGGCCCGGGCCuggaAGGUCc -3'
miRNA:   3'- -GCUCcGGAgUgUCGGGUCCGG----UCCGG- -5'
28955 3' -62.9 NC_006146.1 + 155870 0.72 0.31898
Target:  5'- cCGAGaCCUgGgGGCCCGGGCCuggaAGGUCc -3'
miRNA:   3'- -GCUCcGGAgUgUCGGGUCCGG----UCCGG- -5'
28955 3' -62.9 NC_006146.1 + 124108 0.71 0.333075
Target:  5'- aGAGGCCUUu--GCCCucgcgccGGCC-GGCCa -3'
miRNA:   3'- gCUCCGGAGuguCGGGu------CCGGuCCGG- -5'
28955 3' -62.9 NC_006146.1 + 123639 0.71 0.347621
Target:  5'- -cAGGaCCUCGuCA-CCCGGGCCagGGGCCa -3'
miRNA:   3'- gcUCC-GGAGU-GUcGGGUCCGG--UCCGG- -5'
28955 3' -62.9 NC_006146.1 + 62832 0.71 0.355062
Target:  5'- gGAacCCUgGCcGCCguGGCCAGGCCg -3'
miRNA:   3'- gCUccGGAgUGuCGGguCCGGUCCGG- -5'
28955 3' -62.9 NC_006146.1 + 142876 0.7 0.370279
Target:  5'- uGGGGCCUgGCcgGGUCUAagguGGCCuGGCCu -3'
miRNA:   3'- gCUCCGGAgUG--UCGGGU----CCGGuCCGG- -5'
28955 3' -62.9 NC_006146.1 + 158267 0.7 0.370279
Target:  5'- uGGGGCCUgGCcgGGUCUAagguGGCCuGGCCu -3'
miRNA:   3'- gCUCCGGAgUG--UCGGGU----CCGGuCCGG- -5'
28955 3' -62.9 NC_006146.1 + 14758 0.7 0.378052
Target:  5'- aCGAGGUCagGCAGgCgGGGCuCGGGCa -3'
miRNA:   3'- -GCUCCGGagUGUCgGgUCCG-GUCCGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.