miRNA display CGI


Results 81 - 100 of 562 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28955 3' -62.9 NC_006146.1 + 152792 0.72 0.31898
Target:  5'- cCGAGaCCUgGgGGCCCGGGCCuggaAGGUCc -3'
miRNA:   3'- -GCUCcGGAgUgUCGGGUCCGG----UCCGG- -5'
28955 3' -62.9 NC_006146.1 + 20912 0.71 0.332359
Target:  5'- gGAGGCC-CugAGUCC-GGCCgaccugcAGGCCc -3'
miRNA:   3'- gCUCCGGaGugUCGGGuCCGG-------UCCGG- -5'
28955 3' -62.9 NC_006146.1 + 39813 0.71 0.340291
Target:  5'- aCGGcGGCCguugACGGCCCGgcGGCCucGGCCg -3'
miRNA:   3'- -GCU-CCGGag--UGUCGGGU--CCGGu-CCGG- -5'
28955 3' -62.9 NC_006146.1 + 125358 0.71 0.355062
Target:  5'- gGAGGCCagggCGgccaAGCCCaaggAGGcCCAGGCCc -3'
miRNA:   3'- gCUCCGGa---GUg---UCGGG----UCC-GGUCCGG- -5'
28955 3' -62.9 NC_006146.1 + 118749 0.71 0.355062
Target:  5'- aCGAGGCCaacggCGCGGCuucgaCCuGGUgGGGCCc -3'
miRNA:   3'- -GCUCCGGa----GUGUCG-----GGuCCGgUCCGG- -5'
28955 3' -62.9 NC_006146.1 + 158267 0.7 0.370279
Target:  5'- uGGGGCCUgGCcgGGUCUAagguGGCCuGGCCu -3'
miRNA:   3'- gCUCCGGAgUG--UCGGGU----CCGGuCCGG- -5'
28955 3' -62.9 NC_006146.1 + 14758 0.7 0.378052
Target:  5'- aCGAGGUCagGCAGgCgGGGCuCGGGCa -3'
miRNA:   3'- -GCUCCGGagUGUCgGgUCCG-GUCCGg -5'
28955 3' -62.9 NC_006146.1 + 115134 0.72 0.279408
Target:  5'- gGuGGCCUCGCuGCCCcuGGCCc-GCCg -3'
miRNA:   3'- gCuCCGGAGUGuCGGGu-CCGGucCGG- -5'
28955 3' -62.9 NC_006146.1 + 40863 0.73 0.26054
Target:  5'- gGAGGCCcggcUCGCGGUCCGGagacggaGCCGgGGCCu -3'
miRNA:   3'- gCUCCGG----AGUGUCGGGUC-------CGGU-CCGG- -5'
28955 3' -62.9 NC_006146.1 + 42292 0.73 0.243842
Target:  5'- gGAGGCCagGUAGCCCAGcGCCAGaaaguacaGCCg -3'
miRNA:   3'- gCUCCGGagUGUCGGGUC-CGGUC--------CGG- -5'
28955 3' -62.9 NC_006146.1 + 123247 0.7 0.402022
Target:  5'- --uGGCCgccgCGCuGGgCCGGGCCGcGGCCa -3'
miRNA:   3'- gcuCCGGa---GUG-UCgGGUCCGGU-CCGG- -5'
28955 3' -62.9 NC_006146.1 + 79000 0.69 0.418529
Target:  5'- aGGGGUCgcaaaaGCgAGCCCAGGCCAuGCa -3'
miRNA:   3'- gCUCCGGag----UG-UCGGGUCCGGUcCGg -5'
28955 3' -62.9 NC_006146.1 + 733 0.69 0.426935
Target:  5'- uCGGGaGCCcccuCAGCCCccGGCCGGcGCCg -3'
miRNA:   3'- -GCUC-CGGagu-GUCGGGu-CCGGUC-CGG- -5'
28955 3' -62.9 NC_006146.1 + 33019 0.69 0.426935
Target:  5'- aCGGGGaCCcccugC-CGGCCCgGGGCgGGGCCc -3'
miRNA:   3'- -GCUCC-GGa----GuGUCGGG-UCCGgUCCGG- -5'
28955 3' -62.9 NC_006146.1 + 43489 0.69 0.436297
Target:  5'- aCGuuGCCguacagauuucccagUAgGGUCCGGGCCAGGCUg -3'
miRNA:   3'- -GCucCGGa--------------GUgUCGGGUCCGGUCCGG- -5'
28955 3' -62.9 NC_006146.1 + 154647 0.8 0.089979
Target:  5'- gCGAGGCCggGCAGgCCGGGC-AGGCCg -3'
miRNA:   3'- -GCUCCGGagUGUCgGGUCCGgUCCGG- -5'
28955 3' -62.9 NC_006146.1 + 584 0.79 0.110021
Target:  5'- aGGGGCCgggggCGCGGCCCGGcGCCAGcCCu -3'
miRNA:   3'- gCUCCGGa----GUGUCGGGUC-CGGUCcGG- -5'
28955 3' -62.9 NC_006146.1 + 117775 0.79 0.112803
Target:  5'- gGAGGCaaccgUCGCGcuccCCCGGGCCGGGCCg -3'
miRNA:   3'- gCUCCGg----AGUGUc---GGGUCCGGUCCGG- -5'
28955 3' -62.9 NC_006146.1 + 23467 0.75 0.207192
Target:  5'- aCGAGGCC-C-UGGCCguGGCCAGGUa -3'
miRNA:   3'- -GCUCCGGaGuGUCGGguCCGGUCCGg -5'
28955 3' -62.9 NC_006146.1 + 129048 0.74 0.227514
Target:  5'- aCGAGGCCccggUAGCCCcuGGCCAcGGCCc -3'
miRNA:   3'- -GCUCCGGagu-GUCGGGu-CCGGU-CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.