miRNA display CGI


Results 121 - 140 of 562 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28955 3' -62.9 NC_006146.1 + 121341 0.74 0.232851
Target:  5'- uCGAGGCCaugCugGGCCUggccGGCguGGCCu -3'
miRNA:   3'- -GCUCCGGa--GugUCGGGu---CCGguCCGG- -5'
28955 3' -62.9 NC_006146.1 + 70000 0.73 0.243842
Target:  5'- uCGGGGaCCcCACGGCCgAGacCCAGGCCg -3'
miRNA:   3'- -GCUCC-GGaGUGUCGGgUCc-GGUCCGG- -5'
28955 3' -62.9 NC_006146.1 + 114766 0.69 0.452741
Target:  5'- gGAGGgCUCuCGGUCUcgGGGCCcgcGGCCa -3'
miRNA:   3'- gCUCCgGAGuGUCGGG--UCCGGu--CCGG- -5'
28955 3' -62.9 NC_006146.1 + 131588 0.69 0.444043
Target:  5'- gGAGGCCa-GCcgAGCCCAGuacaCAGGCCu -3'
miRNA:   3'- gCUCCGGagUG--UCGGGUCcg--GUCCGG- -5'
28955 3' -62.9 NC_006146.1 + 105598 0.69 0.435441
Target:  5'- aGAGGCCgcaagagGCAGCgCA-GCCAGGUCc -3'
miRNA:   3'- gCUCCGGag-----UGUCGgGUcCGGUCCGG- -5'
28955 3' -62.9 NC_006146.1 + 149071 0.72 0.305339
Target:  5'- uGAGGCCUCGaGGgCCGGGUUcuGGGCUu -3'
miRNA:   3'- gCUCCGGAGUgUCgGGUCCGG--UCCGG- -5'
28955 3' -62.9 NC_006146.1 + 131455 0.72 0.31484
Target:  5'- uCGAGuuccuuaaauccauCCUCACGGgCCAGGCCccGGCCa -3'
miRNA:   3'- -GCUCc-------------GGAGUGUCgGGUCCGGu-CCGG- -5'
28955 3' -62.9 NC_006146.1 + 146637 0.72 0.31898
Target:  5'- cCGAGaCCUgGgGGCCCGGGCCuggaAGGUCc -3'
miRNA:   3'- -GCUCcGGAgUgUCGGGUCCGG----UCCGG- -5'
28955 3' -62.9 NC_006146.1 + 64158 0.71 0.325971
Target:  5'- -aGGGCCUCGgAGUcugCCAGGCUGGGUg -3'
miRNA:   3'- gcUCCGGAGUgUCG---GGUCCGGUCCGg -5'
28955 3' -62.9 NC_006146.1 + 124108 0.71 0.333075
Target:  5'- aGAGGCCUUu--GCCCucgcgccGGCC-GGCCa -3'
miRNA:   3'- gCUCCGGAGuguCGGGu------CCGGuCCGG- -5'
28955 3' -62.9 NC_006146.1 + 137719 0.71 0.34836
Target:  5'- gGAGGCCaggaccgagcggcggCGCGgcgguGCCCA-GCCGGGCCa -3'
miRNA:   3'- gCUCCGGa--------------GUGU-----CGGGUcCGGUCCGG- -5'
28955 3' -62.9 NC_006146.1 + 62832 0.71 0.355062
Target:  5'- gGAacCCUgGCcGCCguGGCCAGGCCg -3'
miRNA:   3'- gCUccGGAgUGuCGGguCCGGUCCGG- -5'
28955 3' -62.9 NC_006146.1 + 149032 0.7 0.370279
Target:  5'- uGGGGCCUgGCcgGGUCUAagguGGCCuGGCCu -3'
miRNA:   3'- gCUCCGGAgUG--UCGGGU----CCGGuCCGG- -5'
28955 3' -62.9 NC_006146.1 + 158267 0.7 0.370279
Target:  5'- uGGGGCCUgGCcgGGUCUAagguGGCCuGGCCu -3'
miRNA:   3'- gCUCCGGAgUG--UCGGGU----CCGGuCCGG- -5'
28955 3' -62.9 NC_006146.1 + 168482 0.7 0.378052
Target:  5'- --cGGCCUCAC-GUCCAcGGUCgggGGGCCg -3'
miRNA:   3'- gcuCCGGAGUGuCGGGU-CCGG---UCCGG- -5'
28955 3' -62.9 NC_006146.1 + 72343 0.7 0.393925
Target:  5'- uGAGGCCuUCGCuugGGCCCuGGaCC-GGCUg -3'
miRNA:   3'- gCUCCGG-AGUG---UCGGGuCC-GGuCCGG- -5'
28955 3' -62.9 NC_006146.1 + 126415 0.7 0.402022
Target:  5'- cCGGGGUCgcgagCACGGCaCAGGCCAcGCUu -3'
miRNA:   3'- -GCUCCGGa----GUGUCGgGUCCGGUcCGG- -5'
28955 3' -62.9 NC_006146.1 + 137654 0.69 0.417694
Target:  5'- gCGGGGCa--GCGGCCCGGcggacccGCCGgcGGCCa -3'
miRNA:   3'- -GCUCCGgagUGUCGGGUC-------CGGU--CCGG- -5'
28955 3' -62.9 NC_006146.1 + 15034 0.69 0.418529
Target:  5'- gGGGcGCCUgGCcagGGCCC--GCCGGGCCu -3'
miRNA:   3'- gCUC-CGGAgUG---UCGGGucCGGUCCGG- -5'
28955 3' -62.9 NC_006146.1 + 1664 0.69 0.426935
Target:  5'- uCGGGaGCCcccuCAGCCCccGGCCGGcGCCg -3'
miRNA:   3'- -GCUC-CGGagu-GUCGGGu-CCGGUC-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.