Results 61 - 80 of 590 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28955 | 5' | -53 | NC_006146.1 | + | 109583 | 0.76 | 0.592399 |
Target: 5'- gCCGGCUAGGCCaCCcgGGCaGGAcGCCg -3' miRNA: 3'- -GGCCGGUCCGG-GGuaUUGaUUUcUGG- -5' |
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28955 | 5' | -53 | NC_006146.1 | + | 101960 | 0.76 | 0.602651 |
Target: 5'- cCUGGCUagGGGCUCCGggcucUGGCUAGAGGCUc -3' miRNA: 3'- -GGCCGG--UCCGGGGU-----AUUGAUUUCUGG- -5' |
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28955 | 5' | -53 | NC_006146.1 | + | 156060 | 0.75 | 0.674603 |
Target: 5'- cUCGGCCucccgcGGCCCCG-GGCccGAGACCg -3' miRNA: 3'- -GGCCGGu-----CCGGGGUaUUGauUUCUGG- -5' |
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28955 | 5' | -53 | NC_006146.1 | + | 53514 | 0.74 | 0.694972 |
Target: 5'- uCUGGCUgcGGGCCgCGcGugUGAAGGCCg -3' miRNA: 3'- -GGCCGG--UCCGGgGUaUugAUUUCUGG- -5' |
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28955 | 5' | -53 | NC_006146.1 | + | 93604 | 0.74 | 0.705081 |
Target: 5'- aCCcGCCGGGCUCCuggGGCUGcuguccuccccgGAGGCCg -3' miRNA: 3'- -GGcCGGUCCGGGGua-UUGAU------------UUCUGG- -5' |
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28955 | 5' | -53 | NC_006146.1 | + | 46615 | 0.74 | 0.715128 |
Target: 5'- gUCGGCCAGGUcuUCCAUcagGGCcuUGGGGGCCg -3' miRNA: 3'- -GGCCGGUCCG--GGGUA---UUG--AUUUCUGG- -5' |
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28955 | 5' | -53 | NC_006146.1 | + | 56129 | 0.74 | 0.715128 |
Target: 5'- gUGGCCgcGGGCCCCGaGACcgAGAGcACCu -3' miRNA: 3'- gGCCGG--UCCGGGGUaUUGa-UUUC-UGG- -5' |
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28955 | 5' | -53 | NC_006146.1 | + | 151928 | 0.74 | 0.715128 |
Target: 5'- uCCGGCCcuGCCgCCcucuCUAGGGGCCg -3' miRNA: 3'- -GGCCGGucCGG-GGuauuGAUUUCUGG- -5' |
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28955 | 5' | -53 | NC_006146.1 | + | 40678 | 0.74 | 0.725103 |
Target: 5'- aCGGCCuGGCCaCCAcc-CUGAGGugCu -3' miRNA: 3'- gGCCGGuCCGG-GGUauuGAUUUCugG- -5' |
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28955 | 5' | -53 | NC_006146.1 | + | 73431 | 0.73 | 0.734998 |
Target: 5'- -aGGCCGGGCCCCuUGGCaccgGAuGACa -3' miRNA: 3'- ggCCGGUCCGGGGuAUUGa---UUuCUGg -5' |
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28955 | 5' | -53 | NC_006146.1 | + | 5178 | 0.75 | 0.674603 |
Target: 5'- cCUGGCCAGGCCCgA-GACguuuucccuGGGCCu -3' miRNA: 3'- -GGCCGGUCCGGGgUaUUGauu------UCUGG- -5' |
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28955 | 5' | -53 | NC_006146.1 | + | 27993 | 0.75 | 0.664361 |
Target: 5'- cCCGGCCcucgAGGCCUCAcAGCcc-AGGCCa -3' miRNA: 3'- -GGCCGG----UCCGGGGUaUUGauuUCUGG- -5' |
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28955 | 5' | -53 | NC_006146.1 | + | 69494 | 0.76 | 0.602651 |
Target: 5'- aUGGCCAGGCCCgAccuGCcAAAGAUCg -3' miRNA: 3'- gGCCGGUCCGGGgUau-UGaUUUCUGG- -5' |
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28955 | 5' | -53 | NC_006146.1 | + | 49561 | 0.75 | 0.633512 |
Target: 5'- gCCGGCCAGGCCCa---GCau--GGCCu -3' miRNA: 3'- -GGCCGGUCCGGGguauUGauuuCUGG- -5' |
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28955 | 5' | -53 | NC_006146.1 | + | 161838 | 0.75 | 0.643807 |
Target: 5'- -gGGCCAcGCCCCGUG---GGAGACCg -3' miRNA: 3'- ggCCGGUcCGGGGUAUugaUUUCUGG- -5' |
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28955 | 5' | -53 | NC_006146.1 | + | 12603 | 0.75 | 0.664361 |
Target: 5'- cCCGGCCcucgAGGCCUCAcAGCcc-AGGCCa -3' miRNA: 3'- -GGCCGG----UCCGGGGUaUUGauuUCUGG- -5' |
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28955 | 5' | -53 | NC_006146.1 | + | 15682 | 0.75 | 0.664361 |
Target: 5'- cCCGGCCcucgAGGCCUCAcAGCcc-AGGCCa -3' miRNA: 3'- -GGCCGG----UCCGGGGUaUUGauuUCUGG- -5' |
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28955 | 5' | -53 | NC_006146.1 | + | 18760 | 0.75 | 0.664361 |
Target: 5'- cCCGGCCcucgAGGCCUCAcAGCcc-AGGCCa -3' miRNA: 3'- -GGCCGG----UCCGGGGUaUUGauuUCUGG- -5' |
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28955 | 5' | -53 | NC_006146.1 | + | 21838 | 0.75 | 0.664361 |
Target: 5'- cCCGGCCcucgAGGCCUCAcAGCcc-AGGCCa -3' miRNA: 3'- -GGCCGG----UCCGGGGUaUUGauuUCUGG- -5' |
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28955 | 5' | -53 | NC_006146.1 | + | 24916 | 0.75 | 0.664361 |
Target: 5'- cCCGGCCcucgAGGCCUCAcAGCcc-AGGCCa -3' miRNA: 3'- -GGCCGG----UCCGGGGUaUUGauuUCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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