miRNA display CGI


Results 1 - 20 of 590 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28955 5' -53 NC_006146.1 + 128754 0.66 0.978659
Target:  5'- uCCGuGCCAGGCCgaCAc-GCUcAGGGACa -3'
miRNA:   3'- -GGC-CGGUCCGGg-GUauUGA-UUUCUGg -5'
28955 5' -53 NC_006146.1 + 130171 0.66 0.978659
Target:  5'- cCCGGCCGaGUCgUAU--UUAAAGGCCa -3'
miRNA:   3'- -GGCCGGUcCGGgGUAuuGAUUUCUGG- -5'
28955 5' -53 NC_006146.1 + 60007 0.66 0.979563
Target:  5'- -aGGCCAacgcGGCCCCGUccccgccugcgcccgAGCccGAGACg -3'
miRNA:   3'- ggCCGGU----CCGGGGUA---------------UUGauUUCUGg -5'
28955 5' -53 NC_006146.1 + 151190 0.66 0.980867
Target:  5'- gCCGGCCuccucCCCCGUGGaccaGAGGACg -3'
miRNA:   3'- -GGCCGGucc--GGGGUAUUga--UUUCUGg -5'
28955 5' -53 NC_006146.1 + 2293 0.66 0.978659
Target:  5'- aCCGgaGCCAGGCCCUccuuccGACaguuccAGGCCa -3'
miRNA:   3'- -GGC--CGGUCCGGGGua----UUGauu---UCUGG- -5'
28955 5' -53 NC_006146.1 + 138092 0.66 0.978659
Target:  5'- gCCGGCUGGGgguugugcacCCCCcgAGCgucuGGACg -3'
miRNA:   3'- -GGCCGGUCC----------GGGGuaUUGauu-UCUGg -5'
28955 5' -53 NC_006146.1 + 75883 0.66 0.976268
Target:  5'- gUCGG-CGGGCuCCCGUAAUUccAGcACCu -3'
miRNA:   3'- -GGCCgGUCCG-GGGUAUUGAuuUC-UGG- -5'
28955 5' -53 NC_006146.1 + 92891 0.66 0.976268
Target:  5'- aCCuGCUAGGCCaCCAccccccguGCUguccagacagaGAGGACCg -3'
miRNA:   3'- -GGcCGGUCCGG-GGUau------UGA-----------UUUCUGG- -5'
28955 5' -53 NC_006146.1 + 161790 0.66 0.978659
Target:  5'- aCCGGCUccacgguggauAGGCUCCcug---GGAGACCc -3'
miRNA:   3'- -GGCCGG-----------UCCGGGGuauugaUUUCUGG- -5'
28955 5' -53 NC_006146.1 + 42867 0.66 0.978659
Target:  5'- aCGGUCAGGCagcuCCuguauuUAACUuugcGGGCCg -3'
miRNA:   3'- gGCCGGUCCGg---GGu-----AUUGAuu--UCUGG- -5'
28955 5' -53 NC_006146.1 + 55597 0.66 0.980867
Target:  5'- -aGGUCuGGUCCCAgAGC--AGGGCCu -3'
miRNA:   3'- ggCCGGuCCGGGGUaUUGauUUCUGG- -5'
28955 5' -53 NC_006146.1 + 103869 0.66 0.986633
Target:  5'- cCCGGCCGacugucGGCUCCcgGACacgcggcucacccGGGCCa -3'
miRNA:   3'- -GGCCGGU------CCGGGGuaUUGauu----------UCUGG- -5'
28955 5' -53 NC_006146.1 + 61438 0.66 0.980867
Target:  5'- aCGGCCGGGCUgaUCAgcuUUGAGGugUc -3'
miRNA:   3'- gGCCGGUCCGG--GGUauuGAUUUCugG- -5'
28955 5' -53 NC_006146.1 + 10650 0.66 0.976268
Target:  5'- cCCGGCCAGGgCUguU-ACUGAAaAUCa -3'
miRNA:   3'- -GGCCGGUCCgGGguAuUGAUUUcUGG- -5'
28955 5' -53 NC_006146.1 + 78911 0.66 0.978659
Target:  5'- cCCaGGCCGGGCCCgCcaguGUGAUUGugauGCCu -3'
miRNA:   3'- -GG-CCGGUCCGGG-G----UAUUGAUuuc-UGG- -5'
28955 5' -53 NC_006146.1 + 34262 0.66 0.978659
Target:  5'- gCCGGCUGGGgguugugcacCCCCcgAGCgucuGGACg -3'
miRNA:   3'- -GGCCGGUCC----------GGGGuaUUGauu-UCUGg -5'
28955 5' -53 NC_006146.1 + 84531 0.66 0.976268
Target:  5'- gCCGGUaCAGGCgCCGUGGCaggugguuGGGCa -3'
miRNA:   3'- -GGCCG-GUCCGgGGUAUUGauu-----UCUGg -5'
28955 5' -53 NC_006146.1 + 158827 0.66 0.977247
Target:  5'- aCGGCCGGGgCCCGgcccucgcaaagcgAGCacauGGGGCUg -3'
miRNA:   3'- gGCCGGUCCgGGGUa-------------UUGau--UUCUGG- -5'
28955 5' -53 NC_006146.1 + 135699 0.66 0.977247
Target:  5'- gUGGCCGGGCCgcugCCGgguccGCUGcccguccuggagcucGGGGCCg -3'
miRNA:   3'- gGCCGGUCCGG----GGUau---UGAU---------------UUCUGG- -5'
28955 5' -53 NC_006146.1 + 117874 0.66 0.978659
Target:  5'- gCGGCUgagauGGGCaCCCGaGGCUGGucaucGACCc -3'
miRNA:   3'- gGCCGG-----UCCG-GGGUaUUGAUUu----CUGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.