miRNA display CGI


Results 1 - 20 of 590 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28955 5' -53 NC_006146.1 + 378 0.67 0.973686
Target:  5'- gCCGcGCCcccucAGGCCCCGcccgccgcgcGCUGGGGGuCCg -3'
miRNA:   3'- -GGC-CGG-----UCCGGGGUau--------UGAUUUCU-GG- -5'
28955 5' -53 NC_006146.1 + 476 0.73 0.782924
Target:  5'- aCGcGCCGGGCCCC---GCg--GGACCc -3'
miRNA:   3'- gGC-CGGUCCGGGGuauUGauuUCUGG- -5'
28955 5' -53 NC_006146.1 + 709 0.68 0.945408
Target:  5'- cCCcGCCAGGCCCCGgccccgccCUcgGGAgCCc -3'
miRNA:   3'- -GGcCGGUCCGGGGUauu-----GAuuUCU-GG- -5'
28955 5' -53 NC_006146.1 + 832 0.69 0.936044
Target:  5'- gCCGGCCAuccccacgcgcGGCCCCGggccCUccccgacauccAGGGACUg -3'
miRNA:   3'- -GGCCGGU-----------CCGGGGUauu-GA-----------UUUCUGG- -5'
28955 5' -53 NC_006146.1 + 1309 0.66 0.982899
Target:  5'- gCCGcGCCcccucAGGCCCCAcccGACgcgcgcucGGGCCc -3'
miRNA:   3'- -GGC-CGG-----UCCGGGGUa--UUGauu-----UCUGG- -5'
28955 5' -53 NC_006146.1 + 1407 0.73 0.782924
Target:  5'- aCGcGCCGGGCCCC---GCg--GGACCc -3'
miRNA:   3'- gGC-CGGUCCGGGGuauUGauuUCUGG- -5'
28955 5' -53 NC_006146.1 + 1640 0.68 0.945408
Target:  5'- cCCcGCCAGGCCCCGgccccgccCUcgGGAgCCc -3'
miRNA:   3'- -GGcCGGUCCGGGGUauu-----GAuuUCU-GG- -5'
28955 5' -53 NC_006146.1 + 1764 0.69 0.936044
Target:  5'- gCCGGCCAuccccacgcgcGGCCCCGggccCUccccgacauccAGGGACUg -3'
miRNA:   3'- -GGCCGGU-----------CCGGGGUauu-GA-----------UUUCUGG- -5'
28955 5' -53 NC_006146.1 + 2241 0.66 0.982899
Target:  5'- gCCGcGCCcccucAGGCCCCAcccGACgcgcgcucGGGCCc -3'
miRNA:   3'- -GGC-CGG-----UCCGGGGUa--UUGauu-----UCUGG- -5'
28955 5' -53 NC_006146.1 + 2293 0.66 0.978659
Target:  5'- aCCGgaGCCAGGCCCUccuuccGACaguuccAGGCCa -3'
miRNA:   3'- -GGC--CGGUCCGGGGua----UUGauu---UCUGG- -5'
28955 5' -53 NC_006146.1 + 2339 0.73 0.782924
Target:  5'- aCGcGCCGGGCCCC---GCg--GGACCc -3'
miRNA:   3'- gGC-CGGUCCGGGGuauUGauuUCUGG- -5'
28955 5' -53 NC_006146.1 + 2572 0.68 0.945408
Target:  5'- cCCcGCCAGGCCCCGgccccgccCUcgGGAgCCc -3'
miRNA:   3'- -GGcCGGUCCGGGGUauu-----GAuuUCU-GG- -5'
28955 5' -53 NC_006146.1 + 2696 0.69 0.936044
Target:  5'- gCCGGCCAuccccacgcgcGGCCCCGggccCUccccgacauccAGGGACUg -3'
miRNA:   3'- -GGCCGGU-----------CCGGGGUauu-GA-----------UUUCUGG- -5'
28955 5' -53 NC_006146.1 + 2757 0.67 0.973686
Target:  5'- cCCGGCCcucgcAGGCCCaagcccgGAUgucaggGAAGACg -3'
miRNA:   3'- -GGCCGG-----UCCGGGgua----UUGa-----UUUCUGg -5'
28955 5' -53 NC_006146.1 + 3173 0.66 0.982899
Target:  5'- gCCGcGCCcccucAGGCCCCAcccGACgcgcgcucGGGCCc -3'
miRNA:   3'- -GGC-CGG-----UCCGGGGUa--UUGauu-----UCUGG- -5'
28955 5' -53 NC_006146.1 + 3271 0.73 0.782924
Target:  5'- aCGcGCCGGGCCCC---GCg--GGACCc -3'
miRNA:   3'- gGC-CGGUCCGGGGuauUGauuUCUGG- -5'
28955 5' -53 NC_006146.1 + 3504 0.68 0.945408
Target:  5'- cCCcGCCAGGCCCCGgccccgccCUcgGGAgCCc -3'
miRNA:   3'- -GGcCGGUCCGGGGUauu-----GAuuUCU-GG- -5'
28955 5' -53 NC_006146.1 + 3628 0.69 0.936044
Target:  5'- gCCGGCCAuccccacgcgcGGCCCCGggccCUccccgacauccAGGGACUg -3'
miRNA:   3'- -GGCCGGU-----------CCGGGGUauu-GA-----------UUUCUGG- -5'
28955 5' -53 NC_006146.1 + 3890 0.71 0.867464
Target:  5'- cUCGGCgAGGCCCaccGAC--GAGGCCc -3'
miRNA:   3'- -GGCCGgUCCGGGguaUUGauUUCUGG- -5'
28955 5' -53 NC_006146.1 + 4367 0.77 0.561845
Target:  5'- gUGGCCAcGGCCCCGcgGGCUccccAGGCCg -3'
miRNA:   3'- gGCCGGU-CCGGGGUa-UUGAuu--UCUGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.