Results 21 - 40 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28957 | 3' | -50.4 | NC_006146.1 | + | 148453 | 0.67 | 0.989205 |
Target: 5'- -aGAGCCagccagCGgcUGAACCCGAGGAGg- -3' miRNA: 3'- gaCUCGGg-----GCa-ACUUGGGUUUCUUac -5' |
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28957 | 3' | -50.4 | NC_006146.1 | + | 157686 | 0.67 | 0.989205 |
Target: 5'- -aGAGCCagccagCGgcUGAACCCGAGGAGg- -3' miRNA: 3'- gaCUCGGg-----GCa-ACUUGGGUUUCUUac -5' |
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28957 | 3' | -50.4 | NC_006146.1 | + | 142297 | 0.67 | 0.989205 |
Target: 5'- -aGAGCCagccagCGgcUGAACCCGAGGAGg- -3' miRNA: 3'- gaCUCGGg-----GCa-ACUUGGGUUUCUUac -5' |
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28957 | 3' | -50.4 | NC_006146.1 | + | 154609 | 0.67 | 0.989205 |
Target: 5'- -aGAGCCagccagCGgcUGAACCCGAGGAGg- -3' miRNA: 3'- gaCUCGGg-----GCa-ACUUGGGUUUCUUac -5' |
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28957 | 3' | -50.4 | NC_006146.1 | + | 151531 | 0.67 | 0.989205 |
Target: 5'- -aGAGCCagccagCGgcUGAACCCGAGGAGg- -3' miRNA: 3'- gaCUCGGg-----GCa-ACUUGGGUUUCUUac -5' |
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28957 | 3' | -50.4 | NC_006146.1 | + | 148024 | 0.67 | 0.989063 |
Target: 5'- -gGGGCCuCUGUUGAgaucggcguugggGCCCAugaugaugagGAGGAUGa -3' miRNA: 3'- gaCUCGG-GGCAACU-------------UGGGU----------UUCUUAC- -5' |
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28957 | 3' | -50.4 | NC_006146.1 | + | 127406 | 0.68 | 0.988333 |
Target: 5'- gCUGGGCCCCGccgccgGAGCcggugucaacggccgCCGAGGAGg- -3' miRNA: 3'- -GACUCGGGGCaa----CUUG---------------GGUUUCUUac -5' |
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28957 | 3' | -50.4 | NC_006146.1 | + | 170570 | 0.68 | 0.987722 |
Target: 5'- ---uGCuCCCGUUG-GCCgGGAGAAUGa -3' miRNA: 3'- gacuCG-GGGCAACuUGGgUUUCUUAC- -5' |
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28957 | 3' | -50.4 | NC_006146.1 | + | 128879 | 0.68 | 0.987722 |
Target: 5'- gUGAGCCC----GGGCCCAGAGGGa- -3' miRNA: 3'- gACUCGGGgcaaCUUGGGUUUCUUac -5' |
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28957 | 3' | -50.4 | NC_006146.1 | + | 116961 | 0.68 | 0.986086 |
Target: 5'- gUGAGCCCCugcGUccGGACCuCGAGGAGc- -3' miRNA: 3'- gACUCGGGG---CAa-CUUGG-GUUUCUUac -5' |
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28957 | 3' | -50.4 | NC_006146.1 | + | 113574 | 0.68 | 0.986086 |
Target: 5'- -gGGGCCCCGcc---CCCAGAGAGc- -3' miRNA: 3'- gaCUCGGGGCaacuuGGGUUUCUUac -5' |
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28957 | 3' | -50.4 | NC_006146.1 | + | 8041 | 0.68 | 0.982319 |
Target: 5'- gCUG-GCaCCCGcUGGACCCGgcccuGGGggUGu -3' miRNA: 3'- -GACuCG-GGGCaACUUGGGU-----UUCuuAC- -5' |
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28957 | 3' | -50.4 | NC_006146.1 | + | 150291 | 0.68 | 0.982319 |
Target: 5'- -gGuGCCCCcggUGAGCCUGAAGGAc- -3' miRNA: 3'- gaCuCGGGGca-ACUUGGGUUUCUUac -5' |
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28957 | 3' | -50.4 | NC_006146.1 | + | 12364 | 0.68 | 0.98017 |
Target: 5'- -gGAGCCCCag-GGACCCcGGGAc-- -3' miRNA: 3'- gaCUCGGGGcaaCUUGGGuUUCUuac -5' |
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28957 | 3' | -50.4 | NC_006146.1 | + | 152950 | 0.69 | 0.977832 |
Target: 5'- -gGGGCCUCGgaGGGCCUGGAGGGc- -3' miRNA: 3'- gaCUCGGGGCaaCUUGGGUUUCUUac -5' |
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28957 | 3' | -50.4 | NC_006146.1 | + | 156028 | 0.69 | 0.977832 |
Target: 5'- -gGGGCCUCGgaGGGCCUGGAGGGc- -3' miRNA: 3'- gaCUCGGGGCaaCUUGGGUUUCUUac -5' |
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28957 | 3' | -50.4 | NC_006146.1 | + | 146794 | 0.69 | 0.977832 |
Target: 5'- -gGGGCCUCGgaGGGCCUGGAGGGc- -3' miRNA: 3'- gaCUCGGGGCaaCUUGGGUUUCUUac -5' |
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28957 | 3' | -50.4 | NC_006146.1 | + | 149872 | 0.69 | 0.977832 |
Target: 5'- -gGGGCCUCGgaGGGCCUGGAGGGc- -3' miRNA: 3'- gaCUCGGGGCaaCUUGGGUUUCUUac -5' |
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28957 | 3' | -50.4 | NC_006146.1 | + | 45291 | 0.69 | 0.977832 |
Target: 5'- cCUGAGgCCCGccaGAccaagACCCAGAGGAa- -3' miRNA: 3'- -GACUCgGGGCaa-CU-----UGGGUUUCUUac -5' |
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28957 | 3' | -50.4 | NC_006146.1 | + | 143716 | 0.69 | 0.977832 |
Target: 5'- -gGGGCCUCGgaGGGCCUGGAGGGc- -3' miRNA: 3'- gaCUCGGGGCaaCUUGGGUUUCUUac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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