miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28957 3' -50.4 NC_006146.1 + 282 0.69 0.972555
Target:  5'- -gGAGCCCgGgaaGACCCGGGGGcgGg -3'
miRNA:   3'- gaCUCGGGgCaacUUGGGUUUCUuaC- -5'
28957 3' -50.4 NC_006146.1 + 482 0.67 0.993795
Target:  5'- -cGGGCCCCGcgGGACCCc------- -3'
miRNA:   3'- gaCUCGGGGCaaCUUGGGuuucuuac -5'
28957 3' -50.4 NC_006146.1 + 1213 0.69 0.972555
Target:  5'- -gGAGCCCgGgaaGACCCGGGGGcgGg -3'
miRNA:   3'- gaCUCGGGgCaacUUGGGUUUCUuaC- -5'
28957 3' -50.4 NC_006146.1 + 1413 0.67 0.993795
Target:  5'- -cGGGCCCCGcgGGACCCc------- -3'
miRNA:   3'- gaCUCGGGGCaaCUUGGGuuucuuac -5'
28957 3' -50.4 NC_006146.1 + 2145 0.69 0.972555
Target:  5'- -gGAGCCCgGgaaGACCCGGGGGcgGg -3'
miRNA:   3'- gaCUCGGGgCaacUUGGGUUUCUuaC- -5'
28957 3' -50.4 NC_006146.1 + 2345 0.67 0.993795
Target:  5'- -cGGGCCCCGcgGGACCCc------- -3'
miRNA:   3'- gaCUCGGGGCaaCUUGGGuuucuuac -5'
28957 3' -50.4 NC_006146.1 + 3077 0.69 0.972555
Target:  5'- -gGAGCCCgGgaaGACCCGGGGGcgGg -3'
miRNA:   3'- gaCUCGGGgCaacUUGGGUUUCUuaC- -5'
28957 3' -50.4 NC_006146.1 + 3277 0.67 0.993795
Target:  5'- -cGGGCCCCGcgGGACCCc------- -3'
miRNA:   3'- gaCUCGGGGCaaCUUGGGuuucuuac -5'
28957 3' -50.4 NC_006146.1 + 5202 0.66 0.99718
Target:  5'- cCUGGGCCUgGggGAGCU--AGGggUGc -3'
miRNA:   3'- -GACUCGGGgCaaCUUGGguUUCuuAC- -5'
28957 3' -50.4 NC_006146.1 + 8041 0.68 0.982319
Target:  5'- gCUG-GCaCCCGcUGGACCCGgcccuGGGggUGu -3'
miRNA:   3'- -GACuCG-GGGCaACUUGGGU-----UUCuuAC- -5'
28957 3' -50.4 NC_006146.1 + 12364 0.68 0.98017
Target:  5'- -gGAGCCCCag-GGACCCcGGGAc-- -3'
miRNA:   3'- gaCUCGGGGcaaCUUGGGuUUCUuac -5'
28957 3' -50.4 NC_006146.1 + 12828 0.69 0.975296
Target:  5'- -aGAGCCCuccggCGgccGGACCCGAGGAGg- -3'
miRNA:   3'- gaCUCGGG-----GCaa-CUUGGGUUUCUUac -5'
28957 3' -50.4 NC_006146.1 + 13334 1.08 0.011501
Target:  5'- uCUGAGCCCCGUUGAACCCAAAGAAUGu -3'
miRNA:   3'- -GACUCGGGGCAACUUGGGUUUCUUAC- -5'
28957 3' -50.4 NC_006146.1 + 13937 0.72 0.902983
Target:  5'- gUGGGCCCgGggGAGCCCAGGa---- -3'
miRNA:   3'- gACUCGGGgCaaCUUGGGUUUcuuac -5'
28957 3' -50.4 NC_006146.1 + 15907 0.69 0.975296
Target:  5'- -aGAGCCCuccggCGgccGGACCCGAGGAGg- -3'
miRNA:   3'- gaCUCGGG-----GCaa-CUUGGGUUUCUUac -5'
28957 3' -50.4 NC_006146.1 + 16412 1.08 0.011501
Target:  5'- uCUGAGCCCCGUUGAACCCAAAGAAUGu -3'
miRNA:   3'- -GACUCGGGGCAACUUGGGUUUCUUAC- -5'
28957 3' -50.4 NC_006146.1 + 18984 0.69 0.975296
Target:  5'- -aGAGCCCuccggCGgccGGACCCGAGGAGg- -3'
miRNA:   3'- gaCUCGGG-----GCaa-CUUGGGUUUCUUac -5'
28957 3' -50.4 NC_006146.1 + 19490 1.08 0.011501
Target:  5'- uCUGAGCCCCGUUGAACCCAAAGAAUGu -3'
miRNA:   3'- -GACUCGGGGCAACUUGGGUUUCUUAC- -5'
28957 3' -50.4 NC_006146.1 + 22062 0.69 0.975296
Target:  5'- -aGAGCCCuccggCGgccGGACCCGAGGAGg- -3'
miRNA:   3'- gaCUCGGG-----GCaa-CUUGGGUUUCUUac -5'
28957 3' -50.4 NC_006146.1 + 22568 1.08 0.011501
Target:  5'- uCUGAGCCCCGUUGAACCCAAAGAAUGu -3'
miRNA:   3'- -GACUCGGGGCAACUUGGGUUUCUUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.