Results 1 - 20 of 235 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
28957 | 5' | -69.1 | NC_006146.1 | + | 118570 | 0.65 | 0.379244 |
Target: 5'- cGCCGCCC-CGGgcaccccGGCCCacgucAGGGUCagcaCCUAc -3' miRNA: 3'- -CGGCGGGaGCC-------CCGGG-----UCCCGG----GGAU- -5' |
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28957 | 5' | -69.1 | NC_006146.1 | + | 16183 | 0.66 | 0.350512 |
Target: 5'- gGUCGCCaggCGGGGUCC--GGCCUCUc -3' miRNA: 3'- -CGGCGGga-GCCCCGGGucCCGGGGAu -5' |
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28957 | 5' | -69.1 | NC_006146.1 | + | 131109 | 0.66 | 0.35773 |
Target: 5'- cGCCGUCCcagaagcCGGGaGCUCcGGGCCCa-- -3' miRNA: 3'- -CGGCGGGa------GCCC-CGGGuCCCGGGgau -5' |
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28957 | 5' | -69.1 | NC_006146.1 | + | 109343 | 0.66 | 0.357003 |
Target: 5'- cGUgGCCCUCGGGGUggggaauagacagCgAGGGCguccCCCg- -3' miRNA: 3'- -CGgCGGGAGCCCCG-------------GgUCCCG----GGGau -5' |
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28957 | 5' | -69.1 | NC_006146.1 | + | 42016 | 0.66 | 0.342693 |
Target: 5'- uGCCGagcuacuCCCUCuGGGCCC-GGGCUCa-- -3' miRNA: 3'- -CGGC-------GGGAGcCCCGGGuCCCGGGgau -5' |
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28957 | 5' | -69.1 | NC_006146.1 | + | 48263 | 0.66 | 0.343398 |
Target: 5'- cGCCGCCgUCcuGGCgCgaaagAGGGCCCCg- -3' miRNA: 3'- -CGGCGGgAGccCCGgG-----UCCCGGGGau -5' |
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28957 | 5' | -69.1 | NC_006146.1 | + | 130469 | 0.66 | 0.350512 |
Target: 5'- cCCGCCUaCGGGGCCgCugccGCCCCg- -3' miRNA: 3'- cGGCGGGaGCCCCGG-Gucc-CGGGGau -5' |
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28957 | 5' | -69.1 | NC_006146.1 | + | 19261 | 0.66 | 0.350512 |
Target: 5'- gGUCGCCaggCGGGGUCC--GGCCUCUc -3' miRNA: 3'- -CGGCGGga-GCCCCGGGucCCGGGGAu -5' |
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28957 | 5' | -69.1 | NC_006146.1 | + | 25417 | 0.66 | 0.350512 |
Target: 5'- gGUCGCCaggCGGGGUCC--GGCCUCUc -3' miRNA: 3'- -CGGCGGga-GCCCCGGGucCCGGGGAu -5' |
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28957 | 5' | -69.1 | NC_006146.1 | + | 169568 | 0.66 | 0.346232 |
Target: 5'- gGCUuCCC-CGGGGCCCgagcgcgcgucggguGGGGCCUg-- -3' miRNA: 3'- -CGGcGGGaGCCCCGGG---------------UCCCGGGgau -5' |
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28957 | 5' | -69.1 | NC_006146.1 | + | 102867 | 0.66 | 0.343398 |
Target: 5'- aGCCGCCaccuggUCGuGGCC--GGGCCCCa- -3' miRNA: 3'- -CGGCGGg-----AGCcCCGGguCCCGGGGau -5' |
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28957 | 5' | -69.1 | NC_006146.1 | + | 95524 | 0.66 | 0.350512 |
Target: 5'- --aGCUgUCGGGuGCggcgccuggCCAGGGUCCCUAu -3' miRNA: 3'- cggCGGgAGCCC-CG---------GGUCCCGGGGAU- -5' |
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28957 | 5' | -69.1 | NC_006146.1 | + | 49992 | 0.66 | 0.33639 |
Target: 5'- gGCCGCCacaUUgugcacgaaggGGGGCaCCaccgaagcagaaGGGGCCCCg- -3' miRNA: 3'- -CGGCGGg--AG-----------CCCCG-GG------------UCCCGGGGau -5' |
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28957 | 5' | -69.1 | NC_006146.1 | + | 30372 | 0.66 | 0.365051 |
Target: 5'- uGCCGuCCCUCccaGGGCUagguuugcugUAGGGCCgCCa- -3' miRNA: 3'- -CGGC-GGGAGc--CCCGG----------GUCCCGG-GGau -5' |
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28957 | 5' | -69.1 | NC_006146.1 | + | 22339 | 0.66 | 0.350512 |
Target: 5'- gGUCGCCaggCGGGGUCC--GGCCUCUc -3' miRNA: 3'- -CGGCGGga-GCCCCGGGucCCGGGGAu -5' |
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28957 | 5' | -69.1 | NC_006146.1 | + | 123150 | 0.66 | 0.350512 |
Target: 5'- gGCCGCUCUCcGucCCCAGGgccaGCCCCUc -3' miRNA: 3'- -CGGCGGGAGcCccGGGUCC----CGGGGAu -5' |
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28957 | 5' | -69.1 | NC_006146.1 | + | 28495 | 0.66 | 0.350512 |
Target: 5'- gGUCGCCaggCGGGGUCC--GGCCUCUc -3' miRNA: 3'- -CGGCGGga-GCCCCGGGucCCGGGGAu -5' |
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28957 | 5' | -69.1 | NC_006146.1 | + | 164453 | 0.66 | 0.350512 |
Target: 5'- gGuuGUUgUUGGGGCCCcauggaccccAGGGCCCa-- -3' miRNA: 3'- -CggCGGgAGCCCCGGG----------UCCCGGGgau -5' |
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28957 | 5' | -69.1 | NC_006146.1 | + | 168636 | 0.66 | 0.341285 |
Target: 5'- gGCUuCCC-CGGGGCCCgagcgcgcgucgguGGGGCCUg-- -3' miRNA: 3'- -CGGcGGGaGCCCCGGG--------------UCCCGGGgau -5' |
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28957 | 5' | -69.1 | NC_006146.1 | + | 167703 | 0.66 | 0.346232 |
Target: 5'- gGCUuCCC-CGGGGCCCgagcgcgcgucggguGGGGCCUg-- -3' miRNA: 3'- -CGGcGGGaGCCCCGGG---------------UCCCGGGgau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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