miRNA display CGI


Results 1 - 20 of 235 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28957 5' -69.1 NC_006146.1 + 401 0.72 0.143775
Target:  5'- cGCCGCgCgCUgGGGGUCCGGGGaagccCCCCg- -3'
miRNA:   3'- -CGGCG-G-GAgCCCCGGGUCCC-----GGGGau -5'
28957 5' -69.1 NC_006146.1 + 432 0.67 0.329485
Target:  5'- cGCuCGcCCCUCGGGucgcgggacacGCCCccGGGUCCCc- -3'
miRNA:   3'- -CG-GC-GGGAGCCC-----------CGGGu-CCCGGGGau -5'
28957 5' -69.1 NC_006146.1 + 726 0.73 0.118837
Target:  5'- cCCGCCCUCGGGaGCCCccucaGCCCCc- -3'
miRNA:   3'- cGGCGGGAGCCC-CGGGucc--CGGGGau -5'
28957 5' -69.1 NC_006146.1 + 912 0.66 0.35773
Target:  5'- cGCCGCCCccCGGGaCCCcGGGCgcgcgccggccuCCCg- -3'
miRNA:   3'- -CGGCGGGa-GCCCcGGGuCCCG------------GGGau -5'
28957 5' -69.1 NC_006146.1 + 1164 0.66 0.343398
Target:  5'- gGCCGCCC-CGGGGCUC----CCCCg- -3'
miRNA:   3'- -CGGCGGGaGCCCCGGGucccGGGGau -5'
28957 5' -69.1 NC_006146.1 + 1336 0.66 0.33639
Target:  5'- -gCGCgCUCGGGcCCCGGGgaaGCCCCc- -3'
miRNA:   3'- cgGCGgGAGCCCcGGGUCC---CGGGGau -5'
28957 5' -69.1 NC_006146.1 + 1363 0.67 0.329485
Target:  5'- cGCuCGcCCCUCGGGucgcgggacacGCCCccGGGUCCCc- -3'
miRNA:   3'- -CG-GC-GGGAGCCC-----------CGGGu-CCCGGGGau -5'
28957 5' -69.1 NC_006146.1 + 1657 0.73 0.118837
Target:  5'- cCCGCCCUCGGGaGCCCccucaGCCCCc- -3'
miRNA:   3'- cGGCGGGAGCCC-CGGGucc--CGGGGau -5'
28957 5' -69.1 NC_006146.1 + 1844 0.66 0.35773
Target:  5'- cGCCGCCCccCGGGaCCCcGGGCgcgcgccggccuCCCg- -3'
miRNA:   3'- -CGGCGGGa-GCCCcGGGuCCCG------------GGGau -5'
28957 5' -69.1 NC_006146.1 + 2096 0.66 0.343398
Target:  5'- gGCCGCCC-CGGGGCUC----CCCCg- -3'
miRNA:   3'- -CGGCGGGaGCCCCGGGucccGGGGau -5'
28957 5' -69.1 NC_006146.1 + 2268 0.66 0.33639
Target:  5'- -gCGCgCUCGGGcCCCGGGgaaGCCCCc- -3'
miRNA:   3'- cgGCGgGAGCCCcGGGUCC---CGGGGau -5'
28957 5' -69.1 NC_006146.1 + 2295 0.67 0.329485
Target:  5'- cGCuCGcCCCUCGGGucgcgggacacGCCCccGGGUCCCc- -3'
miRNA:   3'- -CG-GC-GGGAGCCC-----------CGGGu-CCCGGGGau -5'
28957 5' -69.1 NC_006146.1 + 2589 0.73 0.118837
Target:  5'- cCCGCCCUCGGGaGCCCccucaGCCCCc- -3'
miRNA:   3'- cGGCGGGAGCCC-CGGGucc--CGGGGau -5'
28957 5' -69.1 NC_006146.1 + 2776 0.66 0.35773
Target:  5'- cGCCGCCCccCGGGaCCCcGGGCgcgcgccggccuCCCg- -3'
miRNA:   3'- -CGGCGGGa-GCCCcGGGuCCCG------------GGGau -5'
28957 5' -69.1 NC_006146.1 + 3028 0.66 0.343398
Target:  5'- gGCCGCCC-CGGGGCUC----CCCCg- -3'
miRNA:   3'- -CGGCGGGaGCCCCGGGucccGGGGau -5'
28957 5' -69.1 NC_006146.1 + 3200 0.66 0.33639
Target:  5'- -gCGCgCUCGGGcCCCGGGgaaGCCCCc- -3'
miRNA:   3'- cgGCGgGAGCCCcGGGUCC---CGGGGau -5'
28957 5' -69.1 NC_006146.1 + 3227 0.67 0.329485
Target:  5'- cGCuCGcCCCUCGGGucgcgggacacGCCCccGGGUCCCc- -3'
miRNA:   3'- -CG-GC-GGGAGCCC-----------CGGGu-CCCGGGGau -5'
28957 5' -69.1 NC_006146.1 + 3521 0.73 0.118837
Target:  5'- cCCGCCCUCGGGaGCCCccucaGCCCCc- -3'
miRNA:   3'- cGGCGGGAGCCC-CGGGucc--CGGGGau -5'
28957 5' -69.1 NC_006146.1 + 3708 0.66 0.35773
Target:  5'- cGCCGCCCccCGGGaCCCcGGGCgcgcgccggccuCCCg- -3'
miRNA:   3'- -CGGCGGGa-GCCCcGGGuCCCG------------GGGau -5'
28957 5' -69.1 NC_006146.1 + 5235 0.76 0.071289
Target:  5'- uGCCGgCCUCGGGGCUguGGGgUCCa- -3'
miRNA:   3'- -CGGCgGGAGCCCCGGguCCCgGGGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.