miRNA display CGI


Results 1 - 20 of 185 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28958 3' -60.6 NC_006146.1 + 47316 0.66 0.746256
Target:  5'- cCGGGccuccuggaugaUGGCCuCCAGccGGGCCAGgcgccguuuccAGUCUg -3'
miRNA:   3'- -GCCC------------ACCGG-GGUC--UCCGGUU-----------UCAGGa -5'
28958 3' -60.6 NC_006146.1 + 147668 0.66 0.698442
Target:  5'- uCGGGgcgaguggacgGGCCUgGGAGGCU--GGUUCUg -3'
miRNA:   3'- -GCCCa----------CCGGGgUCUCCGGuuUCAGGA- -5'
28958 3' -60.6 NC_006146.1 + 156901 0.66 0.698442
Target:  5'- uCGGGgcgaguggacgGGCCUgGGAGGCU--GGUUCUg -3'
miRNA:   3'- -GCCCa----------CCGGGgUCUCCGGuuUCAGGA- -5'
28958 3' -60.6 NC_006146.1 + 164480 0.66 0.755571
Target:  5'- aGGGcccacaUGGCCCU--GGGCCAAAGggaCCc -3'
miRNA:   3'- gCCC------ACCGGGGucUCCGGUUUCa--GGa -5'
28958 3' -60.6 NC_006146.1 + 36779 0.66 0.698442
Target:  5'- gGGGUGGCCCUagguguuaggAGGGGCagAAAGcucacauuuUCCa -3'
miRNA:   3'- gCCCACCGGGG----------UCUCCGg-UUUC---------AGGa -5'
28958 3' -60.6 NC_006146.1 + 115768 0.66 0.736847
Target:  5'- uGGG-GGUCCCgauaaacauGGAGGUgGAGGcCCUg -3'
miRNA:   3'- gCCCaCCGGGG---------UCUCCGgUUUCaGGA- -5'
28958 3' -60.6 NC_006146.1 + 142685 0.66 0.755571
Target:  5'- uCGGGUccGGCCgCCGGAGGgcucuaacCCGucucuGUCCa -3'
miRNA:   3'- -GCCCA--CCGG-GGUCUCC--------GGUuu---CAGGa -5'
28958 3' -60.6 NC_006146.1 + 144590 0.66 0.698442
Target:  5'- uCGGGgcgaguggacgGGCCUgGGAGGCU--GGUUCUg -3'
miRNA:   3'- -GCCCa----------CCGGGgUCUCCGGuuUCAGGA- -5'
28958 3' -60.6 NC_006146.1 + 28755 0.66 0.753716
Target:  5'- aGGGgagccgcccucgGGgCCCAG-GGCCccuAGUCCa -3'
miRNA:   3'- gCCCa-----------CCgGGGUCuCCGGuu-UCAGGa -5'
28958 3' -60.6 NC_006146.1 + 62313 0.66 0.698442
Target:  5'- uGGGaGaGCCCagcGAGGCCAGAGacgCCg -3'
miRNA:   3'- gCCCaC-CGGGgu-CUCCGGUUUCa--GGa -5'
28958 3' -60.6 NC_006146.1 + 25677 0.66 0.753716
Target:  5'- aGGGgagccgcccucgGGgCCCAG-GGCCccuAGUCCa -3'
miRNA:   3'- gCCCa-----------CCgGGGUCuCCGGuu-UCAGGa -5'
28958 3' -60.6 NC_006146.1 + 16443 0.66 0.753716
Target:  5'- aGGGgagccgcccucgGGgCCCAG-GGCCccuAGUCCa -3'
miRNA:   3'- gCCCa-----------CCgGGGUCuCCGGuu-UCAGGa -5'
28958 3' -60.6 NC_006146.1 + 141512 0.66 0.698442
Target:  5'- uCGGGgcgaguggacgGGCCUgGGAGGCU--GGUUCUg -3'
miRNA:   3'- -GCCCa----------CCGGGgUCUCCGGuuUCAGGA- -5'
28958 3' -60.6 NC_006146.1 + 19521 0.66 0.753716
Target:  5'- aGGGgagccgcccucgGGgCCCAG-GGCCccuAGUCCa -3'
miRNA:   3'- gCCCa-----------CCgGGGUCuCCGGuu-UCAGGa -5'
28958 3' -60.6 NC_006146.1 + 42324 0.66 0.717782
Target:  5'- gCGaGGUugcugacuGGCCCgGGAGGUCAGuGUCUg -3'
miRNA:   3'- -GC-CCA--------CCGGGgUCUCCGGUUuCAGGa -5'
28958 3' -60.6 NC_006146.1 + 22599 0.66 0.753716
Target:  5'- aGGGgagccgcccucgGGgCCCAG-GGCCccuAGUCCa -3'
miRNA:   3'- gCCCa-----------CCgGGGUCuCCGGuu-UCAGGa -5'
28958 3' -60.6 NC_006146.1 + 150745 0.66 0.698442
Target:  5'- uCGGGgcgaguggacgGGCCUgGGAGGCU--GGUUCUg -3'
miRNA:   3'- -GCCCa----------CCGGGgUCUCCGGuuUCAGGA- -5'
28958 3' -60.6 NC_006146.1 + 13365 0.66 0.753716
Target:  5'- aGGGgagccgcccucgGGgCCCAG-GGCCccuAGUCCa -3'
miRNA:   3'- gCCCa-----------CCgGGGUCuCCGGuu-UCAGGa -5'
28958 3' -60.6 NC_006146.1 + 153823 0.66 0.698442
Target:  5'- uCGGGgcgaguggacgGGCCUgGGAGGCU--GGUUCUg -3'
miRNA:   3'- -GCCCa----------CCGGGgUCUCCGGuuUCAGGA- -5'
28958 3' -60.6 NC_006146.1 + 137859 0.66 0.727353
Target:  5'- uGGGUgggcgugucccgGGCCCCGccccGGGCCGgcaggGGGUCCc -3'
miRNA:   3'- gCCCA------------CCGGGGUc---UCCGGU-----UUCAGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.