Results 1 - 20 of 185 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28958 | 3' | -60.6 | NC_006146.1 | + | 148506 | 0.71 | 0.457622 |
Target: 5'- -cGGUGGaCCCCGG-GGCCAGGGUg-- -3' miRNA: 3'- gcCCACC-GGGGUCuCCGGUUUCAgga -5' |
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28958 | 3' | -60.6 | NC_006146.1 | + | 168542 | 0.72 | 0.373411 |
Target: 5'- uGGG-GGCCUCGGGGGCgGAggggggGGUCCc -3' miRNA: 3'- gCCCaCCGGGGUCUCCGgUU------UCAGGa -5' |
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28958 | 3' | -60.6 | NC_006146.1 | + | 169474 | 0.72 | 0.373411 |
Target: 5'- uGGG-GGCCUCGGGGGCgGAggggggGGUCCc -3' miRNA: 3'- gCCCaCCGGGGUCUCCGgUU------UCAGGa -5' |
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28958 | 3' | -60.6 | NC_006146.1 | + | 170405 | 0.72 | 0.373411 |
Target: 5'- uGGG-GGCCUCGGGGGCgGAggggggGGUCCc -3' miRNA: 3'- gCCCaCCGGGGUCUCCGgUU------UCAGGa -5' |
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28958 | 3' | -60.6 | NC_006146.1 | + | 38969 | 0.72 | 0.378955 |
Target: 5'- cCGGGUgGGCCCCcagacucucgcagaGGGGGCagauGGUCCg -3' miRNA: 3'- -GCCCA-CCGGGG--------------UCUCCGguu-UCAGGa -5' |
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28958 | 3' | -60.6 | NC_006146.1 | + | 54250 | 0.72 | 0.405827 |
Target: 5'- uGGGcGGCCCCGGucAGGCgGGAaacGUCCUc -3' miRNA: 3'- gCCCaCCGGGGUC--UCCGgUUU---CAGGA- -5' |
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28958 | 3' | -60.6 | NC_006146.1 | + | 57853 | 0.72 | 0.405827 |
Target: 5'- aGGccaacGUGGaCCCC-GAGGCCGAcGUCCUg -3' miRNA: 3'- gCC-----CACC-GGGGuCUCCGGUUuCAGGA- -5' |
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28958 | 3' | -60.6 | NC_006146.1 | + | 69852 | 0.71 | 0.420129 |
Target: 5'- --cGUGGCCCUgggaggucgggcguAGAGGCCcAGGUCCa -3' miRNA: 3'- gccCACCGGGG--------------UCUCCGGuUUCAGGa -5' |
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28958 | 3' | -60.6 | NC_006146.1 | + | 95529 | 0.71 | 0.448741 |
Target: 5'- uCGGGUgcGGCgCCu--GGCCAGGGUCCc -3' miRNA: 3'- -GCCCA--CCGgGGucuCCGGUUUCAGGa -5' |
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28958 | 3' | -60.6 | NC_006146.1 | + | 167610 | 0.72 | 0.373411 |
Target: 5'- uGGG-GGCCUCGGGGGCgGAggggggGGUCCc -3' miRNA: 3'- gCCCaCCGGGGUCUCCGgUU------UCAGGa -5' |
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28958 | 3' | -60.6 | NC_006146.1 | + | 170197 | 0.73 | 0.357875 |
Target: 5'- gCGGGgccggGGCCUggCGGGGGCCAGcgcggGGUCCc -3' miRNA: 3'- -GCCCa----CCGGG--GUCUCCGGUU-----UCAGGa -5' |
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28958 | 3' | -60.6 | NC_006146.1 | + | 169266 | 0.73 | 0.357875 |
Target: 5'- gCGGGgccggGGCCUggCGGGGGCCAGcgcggGGUCCc -3' miRNA: 3'- -GCCCa----CCGGG--GUCUCCGGUU-----UCAGGa -5' |
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28958 | 3' | -60.6 | NC_006146.1 | + | 16545 | 1.07 | 0.001687 |
Target: 5'- cCGGGUGGCCCCAGAGGCCAAAGUCCUc -3' miRNA: 3'- -GCCCACCGGGGUCUCCGGUUUCAGGA- -5' |
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28958 | 3' | -60.6 | NC_006146.1 | + | 19623 | 1.07 | 0.001687 |
Target: 5'- cCGGGUGGCCCCAGAGGCCAAAGUCCUc -3' miRNA: 3'- -GCCCACCGGGGUCUCCGGUUUCAGGA- -5' |
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28958 | 3' | -60.6 | NC_006146.1 | + | 22701 | 1.07 | 0.001687 |
Target: 5'- cCGGGUGGCCCCAGAGGCCAAAGUCCUc -3' miRNA: 3'- -GCCCACCGGGGUCUCCGGUUUCAGGA- -5' |
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28958 | 3' | -60.6 | NC_006146.1 | + | 25779 | 1.07 | 0.001687 |
Target: 5'- cCGGGUGGCCCCAGAGGCCAAAGUCCUc -3' miRNA: 3'- -GCCCACCGGGGUCUCCGGUUUCAGGA- -5' |
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28958 | 3' | -60.6 | NC_006146.1 | + | 28857 | 1.07 | 0.001687 |
Target: 5'- cCGGGUGGCCCCAGAGGCCAAAGUCCUc -3' miRNA: 3'- -GCCCACCGGGGUCUCCGGUUUCAGGA- -5' |
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28958 | 3' | -60.6 | NC_006146.1 | + | 155798 | 0.8 | 0.133316 |
Target: 5'- -cGGUGGCCCUGGGGGCCAccGAGUCa- -3' miRNA: 3'- gcCCACCGGGGUCUCCGGU--UUCAGga -5' |
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28958 | 3' | -60.6 | NC_006146.1 | + | 167402 | 0.73 | 0.357875 |
Target: 5'- gCGGGgccggGGCCUggCGGGGGCCAGcgcggGGUCCc -3' miRNA: 3'- -GCCCa----CCGGG--GUCUCCGGUU-----UCAGGa -5' |
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28958 | 3' | -60.6 | NC_006146.1 | + | 168334 | 0.73 | 0.357875 |
Target: 5'- gCGGGgccggGGCCUggCGGGGGCCAGcgcggGGUCCc -3' miRNA: 3'- -GCCCa----CCGGG--GUCUCCGGUU-----UCAGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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