Results 1 - 20 of 241 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28958 | 5' | -55.3 | NC_006146.1 | + | 147111 | 0.66 | 0.956474 |
Target: 5'- gCUGGGGCUcagCGGGcCCCAGAcGCGcaggCCg -3' miRNA: 3'- -GGUCCCGAa--GUCUcGGGUCU-UGCa---GG- -5' |
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28958 | 5' | -55.3 | NC_006146.1 | + | 44516 | 0.66 | 0.956474 |
Target: 5'- uCCGGGGUUUCAG-GCUgAcGGGCGg-- -3' miRNA: 3'- -GGUCCCGAAGUCuCGGgU-CUUGCagg -5' |
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28958 | 5' | -55.3 | NC_006146.1 | + | 56198 | 0.66 | 0.956474 |
Target: 5'- gCCAGGGCccgggUCucgcggacGAGCCgC-GAGcCGUCCa -3' miRNA: 3'- -GGUCCCGa----AGu-------CUCGG-GuCUU-GCAGG- -5' |
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28958 | 5' | -55.3 | NC_006146.1 | + | 151688 | 0.66 | 0.956474 |
Target: 5'- -gAGGGCggcgccUUGGGGCCCGGA--GUCUc -3' miRNA: 3'- ggUCCCGa-----AGUCUCGGGUCUugCAGG- -5' |
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28958 | 5' | -55.3 | NC_006146.1 | + | 114767 | 0.66 | 0.956097 |
Target: 5'- -gAGGGCUcucggucUCGGGGCCC---GCGgCCa -3' miRNA: 3'- ggUCCCGA-------AGUCUCGGGucuUGCaGG- -5' |
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28958 | 5' | -55.3 | NC_006146.1 | + | 51829 | 0.66 | 0.956097 |
Target: 5'- cCCGGGGCggCguggaggGGGGCUCGGGGCcuggCCc -3' miRNA: 3'- -GGUCCCGaaG-------UCUCGGGUCUUGca--GG- -5' |
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28958 | 5' | -55.3 | NC_006146.1 | + | 50734 | 0.66 | 0.956097 |
Target: 5'- gCgGGGGCgaCGGGGCgUCGGGAagggggcCGUCCu -3' miRNA: 3'- -GgUCCCGaaGUCUCG-GGUCUU-------GCAGG- -5' |
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28958 | 5' | -55.3 | NC_006146.1 | + | 123448 | 0.66 | 0.952606 |
Target: 5'- uCCuGGaGCUcgagagCAuGGCCCAGAAC-UCCa -3' miRNA: 3'- -GGuCC-CGAa-----GUcUCGGGUCUUGcAGG- -5' |
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28958 | 5' | -55.3 | NC_006146.1 | + | 140953 | 0.66 | 0.952606 |
Target: 5'- uUguGGGUuugUUCuuuGCCUAGAGCGUgCCa -3' miRNA: 3'- -GguCCCG---AAGucuCGGGUCUUGCA-GG- -5' |
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28958 | 5' | -55.3 | NC_006146.1 | + | 124755 | 0.66 | 0.952606 |
Target: 5'- cCUGGGGCUgguccacaaUCAGAGCacggCCAGGGC--CCg -3' miRNA: 3'- -GGUCCCGA---------AGUCUCG----GGUCUUGcaGG- -5' |
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28958 | 5' | -55.3 | NC_006146.1 | + | 95096 | 0.66 | 0.952606 |
Target: 5'- gCAGGGCcucgaaggCGGcGCCCGaGACGcCCg -3' miRNA: 3'- gGUCCCGaa------GUCuCGGGUcUUGCaGG- -5' |
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28958 | 5' | -55.3 | NC_006146.1 | + | 147713 | 0.66 | 0.952606 |
Target: 5'- gCCAGGaagGCggCGGGGCCUGGGuaauaGCGggCCg -3' miRNA: 3'- -GGUCC---CGaaGUCUCGGGUCU-----UGCa-GG- -5' |
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28958 | 5' | -55.3 | NC_006146.1 | + | 118980 | 0.66 | 0.952606 |
Target: 5'- aCCGGGGCcgcccgUCGGuGCCUcGGAgGcCCc -3' miRNA: 3'- -GGUCCCGa-----AGUCuCGGGuCUUgCaGG- -5' |
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28958 | 5' | -55.3 | NC_006146.1 | + | 53647 | 0.66 | 0.948514 |
Target: 5'- gCGGGGCUcagUCAGcGCCCGacaGACGcUCUu -3' miRNA: 3'- gGUCCCGA---AGUCuCGGGUc--UUGC-AGG- -5' |
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28958 | 5' | -55.3 | NC_006146.1 | + | 114076 | 0.66 | 0.948514 |
Target: 5'- gCCAGaGGCcgccUCGGGGgCCAGAAgcccCGcCCg -3' miRNA: 3'- -GGUC-CCGa---AGUCUCgGGUCUU----GCaGG- -5' |
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28958 | 5' | -55.3 | NC_006146.1 | + | 13127 | 0.66 | 0.948514 |
Target: 5'- aCgGGGGCUcCcGGGCCCAcGAggagagcaACGUCa -3' miRNA: 3'- -GgUCCCGAaGuCUCGGGU-CU--------UGCAGg -5' |
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28958 | 5' | -55.3 | NC_006146.1 | + | 70198 | 0.66 | 0.948514 |
Target: 5'- aCuGGGUcaggUUCAGGGCCCcaua-GUCCa -3' miRNA: 3'- gGuCCCG----AAGUCUCGGGucuugCAGG- -5' |
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28958 | 5' | -55.3 | NC_006146.1 | + | 49034 | 0.66 | 0.948514 |
Target: 5'- uCCGGGGCgc---GGCCCgAGAcCGUCg -3' miRNA: 3'- -GGUCCCGaagucUCGGG-UCUuGCAGg -5' |
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28958 | 5' | -55.3 | NC_006146.1 | + | 42578 | 0.66 | 0.948514 |
Target: 5'- uCCAGGGCcagCAGgaccAGCCCGGGAaagagagagcUGaCCg -3' miRNA: 3'- -GGUCCCGaa-GUC----UCGGGUCUU----------GCaGG- -5' |
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28958 | 5' | -55.3 | NC_006146.1 | + | 108500 | 0.66 | 0.948092 |
Target: 5'- cCCGGGGUUcCGGAGucgauaaccuuacCCCAGGccgaggcccCGUCCu -3' miRNA: 3'- -GGUCCCGAaGUCUC-------------GGGUCUu--------GCAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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