Results 1 - 20 of 241 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28958 | 5' | -55.3 | NC_006146.1 | + | 4954 | 0.66 | 0.944194 |
Target: 5'- cCCGGGGaccaGGGGCCacgAGAGCcUCCu -3' miRNA: 3'- -GGUCCCgaagUCUCGGg--UCUUGcAGG- -5' |
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28958 | 5' | -55.3 | NC_006146.1 | + | 6428 | 0.73 | 0.616831 |
Target: 5'- cCCAGGGCcaUguGGGCCCuGGG-GUCCa -3' miRNA: 3'- -GGUCCCGa-AguCUCGGGuCUUgCAGG- -5' |
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28958 | 5' | -55.3 | NC_006146.1 | + | 12318 | 0.71 | 0.765392 |
Target: 5'- aCCcGGGCUUCAG-GCCCgccucaGUCCc -3' miRNA: 3'- -GGuCCCGAAGUCuCGGGucuug-CAGG- -5' |
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28958 | 5' | -55.3 | NC_006146.1 | + | 12351 | 0.73 | 0.647211 |
Target: 5'- cCCuGGGCcUCAG-GCCCuccGCGUCCc -3' miRNA: 3'- -GGuCCCGaAGUCuCGGGucuUGCAGG- -5' |
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28958 | 5' | -55.3 | NC_006146.1 | + | 12458 | 0.68 | 0.880673 |
Target: 5'- gCCGGGGCcuUUCAGgcccucgGGCCCcucuGGAC-UCCg -3' miRNA: 3'- -GGUCCCG--AAGUC-------UCGGGu---CUUGcAGG- -5' |
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28958 | 5' | -55.3 | NC_006146.1 | + | 12820 | 0.68 | 0.888225 |
Target: 5'- aCAGGGU--UAGAGCCCuccGGCGgCCg -3' miRNA: 3'- gGUCCCGaaGUCUCGGGuc-UUGCaGG- -5' |
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28958 | 5' | -55.3 | NC_006146.1 | + | 13127 | 0.66 | 0.948514 |
Target: 5'- aCgGGGGCUcCcGGGCCCAcGAggagagcaACGUCa -3' miRNA: 3'- -GgUCCCGAaGuCUCGGGU-CU--------UGCAGg -5' |
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28958 | 5' | -55.3 | NC_006146.1 | + | 13267 | 0.67 | 0.911043 |
Target: 5'- aCCAGGGgaccggcgcccCAGAGCCCcucGGGuccgccuccagGCGUCCu -3' miRNA: 3'- -GGUCCCgaa--------GUCUCGGG---UCU-----------UGCAGG- -5' |
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28958 | 5' | -55.3 | NC_006146.1 | + | 13365 | 0.71 | 0.736812 |
Target: 5'- -aGGGGagccgcccUCGGGGCCCAGGGCcccuaGUCCa -3' miRNA: 3'- ggUCCCga------AGUCUCGGGUCUUG-----CAGG- -5' |
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28958 | 5' | -55.3 | NC_006146.1 | + | 13502 | 1.13 | 0.002435 |
Target: 5'- uCCAGGGCUUCAGAGCCCAGAACGUCCc -3' miRNA: 3'- -GGUCCCGAAGUCUCGGGUCUUGCAGG- -5' |
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28958 | 5' | -55.3 | NC_006146.1 | + | 13598 | 0.69 | 0.843948 |
Target: 5'- cCCAGGGCccuccagucCAGA-CCCAGAgACGcCCa -3' miRNA: 3'- -GGUCCCGaa-------GUCUcGGGUCU-UGCaGG- -5' |
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28958 | 5' | -55.3 | NC_006146.1 | + | 14104 | 0.66 | 0.944194 |
Target: 5'- cCCAGGGCgggaugUCGGGGCugCUGGcGGCGgCCu -3' miRNA: 3'- -GGUCCCGa-----AGUCUCG--GGUC-UUGCaGG- -5' |
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28958 | 5' | -55.3 | NC_006146.1 | + | 14527 | 0.7 | 0.81059 |
Target: 5'- -uGGGGCUggAGAGCCUGGAcCGggCCc -3' miRNA: 3'- ggUCCCGAagUCUCGGGUCUuGCa-GG- -5' |
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28958 | 5' | -55.3 | NC_006146.1 | + | 15397 | 0.71 | 0.765392 |
Target: 5'- aCCcGGGCUUCAG-GCCCgccucaGUCCc -3' miRNA: 3'- -GGuCCCGAAGUCuCGGGucuug-CAGG- -5' |
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28958 | 5' | -55.3 | NC_006146.1 | + | 15430 | 0.73 | 0.647211 |
Target: 5'- cCCuGGGCcUCAG-GCCCuccGCGUCCc -3' miRNA: 3'- -GGuCCCGaAGUCuCGGGucuUGCAGG- -5' |
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28958 | 5' | -55.3 | NC_006146.1 | + | 15537 | 0.68 | 0.880673 |
Target: 5'- gCCGGGGCcuUUCAGgcccucgGGCCCcucuGGAC-UCCg -3' miRNA: 3'- -GGUCCCG--AAGUC-------UCGGGu---CUUGcAGG- -5' |
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28958 | 5' | -55.3 | NC_006146.1 | + | 15899 | 0.68 | 0.888225 |
Target: 5'- aCAGGGU--UAGAGCCCuccGGCGgCCg -3' miRNA: 3'- gGUCCCGaaGUCUCGGGuc-UUGCaGG- -5' |
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28958 | 5' | -55.3 | NC_006146.1 | + | 16345 | 0.67 | 0.911043 |
Target: 5'- aCCAGGGgaccggcgcccCAGAGCCCcucGGGuccgccuccagGCGUCCu -3' miRNA: 3'- -GGUCCCgaa--------GUCUCGGG---UCU-----------UGCAGG- -5' |
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28958 | 5' | -55.3 | NC_006146.1 | + | 16443 | 0.71 | 0.736812 |
Target: 5'- -aGGGGagccgcccUCGGGGCCCAGGGCcccuaGUCCa -3' miRNA: 3'- ggUCCCga------AGUCUCGGGUCUUG-----CAGG- -5' |
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28958 | 5' | -55.3 | NC_006146.1 | + | 16580 | 1.13 | 0.002435 |
Target: 5'- uCCAGGGCUUCAGAGCCCAGAACGUCCc -3' miRNA: 3'- -GGUCCCGAAGUCUCGGGUCUUGCAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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