miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2896 3' -50.3 NC_001493.1 + 125677 0.66 0.99569
Target:  5'- ------cGCGAUUCGCGAC-CUCacgggGCCa -3'
miRNA:   3'- cauagcuCGUUAAGCGCUGaGAG-----CGG- -5'
2896 3' -50.3 NC_001493.1 + 10122 0.66 0.99569
Target:  5'- ------cGCGAUUCGCGAC-CUCacgggGCCa -3'
miRNA:   3'- cauagcuCGUUAAGCGCUGaGAG-----CGG- -5'
2896 3' -50.3 NC_001493.1 + 10797 0.66 0.994963
Target:  5'- -gAUCGGGCGcgUCccgaGAgUCUCGaCCg -3'
miRNA:   3'- caUAGCUCGUuaAGcg--CUgAGAGC-GG- -5'
2896 3' -50.3 NC_001493.1 + 126351 0.66 0.994963
Target:  5'- -gAUCGGGCGcgUCccgaGAgUCUCGaCCg -3'
miRNA:   3'- caUAGCUCGUuaAGcg--CUgAGAGC-GG- -5'
2896 3' -50.3 NC_001493.1 + 87639 0.66 0.994963
Target:  5'- -cGUCGAGUc-UUCGgaUGACUC-CGCCc -3'
miRNA:   3'- caUAGCUCGuuAAGC--GCUGAGaGCGG- -5'
2896 3' -50.3 NC_001493.1 + 81973 0.66 0.994139
Target:  5'- ---cCGAGUuuGUUCGuCGAUUC-CGCCc -3'
miRNA:   3'- cauaGCUCGu-UAAGC-GCUGAGaGCGG- -5'
2896 3' -50.3 NC_001493.1 + 63705 0.66 0.994139
Target:  5'- gGUGUCGuucGCGGUgUCGuUGGCUCccgcgggcgUCGCCg -3'
miRNA:   3'- -CAUAGCu--CGUUA-AGC-GCUGAG---------AGCGG- -5'
2896 3' -50.3 NC_001493.1 + 77815 0.66 0.994139
Target:  5'- --cUUGAuGaCGAUacugugUCGCGAuCUCUCGCCc -3'
miRNA:   3'- cauAGCU-C-GUUA------AGCGCU-GAGAGCGG- -5'
2896 3' -50.3 NC_001493.1 + 82693 0.66 0.99321
Target:  5'- -gGUCGAGCcguugcugGcgUgGUGugUCgUCGCCg -3'
miRNA:   3'- caUAGCUCG--------UuaAgCGCugAG-AGCGG- -5'
2896 3' -50.3 NC_001493.1 + 90577 0.66 0.99321
Target:  5'- cGUGUUGAGCGAgaccgUCaCGACgg-CGCUa -3'
miRNA:   3'- -CAUAGCUCGUUa----AGcGCUGagaGCGG- -5'
2896 3' -50.3 NC_001493.1 + 34261 0.66 0.992167
Target:  5'- -gAUCGAGCAcGUggGUGGgUC-CGCCa -3'
miRNA:   3'- caUAGCUCGU-UAagCGCUgAGaGCGG- -5'
2896 3' -50.3 NC_001493.1 + 87335 0.67 0.988259
Target:  5'- -cGUCGAGCG--UCGaUGACg-UCGCCc -3'
miRNA:   3'- caUAGCUCGUuaAGC-GCUGagAGCGG- -5'
2896 3' -50.3 NC_001493.1 + 55387 0.67 0.987953
Target:  5'- -cAUCGGGCGcguugguacugguugGUagGCGgucauugacaggaggGCUCUCGCCu -3'
miRNA:   3'- caUAGCUCGU---------------UAagCGC---------------UGAGAGCGG- -5'
2896 3' -50.3 NC_001493.1 + 110399 0.68 0.970491
Target:  5'- ---cCGGGCA--UCGUGugUCccagUCGCCa -3'
miRNA:   3'- cauaGCUCGUuaAGCGCugAG----AGCGG- -5'
2896 3' -50.3 NC_001493.1 + 24380 0.7 0.928277
Target:  5'- ---cUGAGCgAGUUCGUGACUCUCa-- -3'
miRNA:   3'- cauaGCUCG-UUAAGCGCUGAGAGcgg -5'
2896 3' -50.3 NC_001493.1 + 87044 0.71 0.922658
Target:  5'- ----gGAGCAGgaugaacUCGCGGCUCUgGUCg -3'
miRNA:   3'- cauagCUCGUUa------AGCGCUGAGAgCGG- -5'
2896 3' -50.3 NC_001493.1 + 10907 0.72 0.890684
Target:  5'- cGUGUCGGGUA--UC-CGAUcCUCGCCg -3'
miRNA:   3'- -CAUAGCUCGUuaAGcGCUGaGAGCGG- -5'
2896 3' -50.3 NC_001493.1 + 126461 0.72 0.890684
Target:  5'- cGUGUCGGGUA--UC-CGAUcCUCGCCg -3'
miRNA:   3'- -CAUAGCUCGUuaAGcGCUGaGAGCGG- -5'
2896 3' -50.3 NC_001493.1 + 77643 0.76 0.667914
Target:  5'- gGUAUCGGGCGAgagaUCGCGACacaguaUCGUCa -3'
miRNA:   3'- -CAUAGCUCGUUa---AGCGCUGag----AGCGG- -5'
2896 3' -50.3 NC_001493.1 + 20949 1.13 0.004953
Target:  5'- gGUAUCGAGCAAUUCGCGACUCUCGCCg -3'
miRNA:   3'- -CAUAGCUCGUUAAGCGCUGAGAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.