miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2896 5' -51.6 NC_001493.1 + 87703 0.66 0.982613
Target:  5'- cGGGGuAGGUC-CGGGGGUagauccggcuccucgUACGccgCGGg -3'
miRNA:   3'- uCCCC-UUCAGaGUCCCUA---------------AUGUa--GCC- -5'
2896 5' -51.6 NC_001493.1 + 101955 0.67 0.979603
Target:  5'- aAGaGGGggGUCUgGGuggccagucgaGGAguuucaaUACAUCGGg -3'
miRNA:   3'- -UC-CCCuuCAGAgUC-----------CCUa------AUGUAGCC- -5'
2896 5' -51.6 NC_001493.1 + 49806 0.67 0.977228
Target:  5'- gGGGGGAAgcuGUCUCAGGuccaGGUaguCGUcCGGg -3'
miRNA:   3'- -UCCCCUU---CAGAGUCC----CUAau-GUA-GCC- -5'
2896 5' -51.6 NC_001493.1 + 12721 0.67 0.971877
Target:  5'- cGGGGGAGcCUCAccGGGA-----UCGGg -3'
miRNA:   3'- uCCCCUUCaGAGU--CCCUaauguAGCC- -5'
2896 5' -51.6 NC_001493.1 + 128275 0.67 0.971877
Target:  5'- cGGGGGAGcCUCAccGGGA-----UCGGg -3'
miRNA:   3'- uCCCCUUCaGAGU--CCCUaauguAGCC- -5'
2896 5' -51.6 NC_001493.1 + 108708 0.68 0.965675
Target:  5'- cAGGGGcacaCUCAGGaGUUACGUgGGg -3'
miRNA:   3'- -UCCCCuucaGAGUCCcUAAUGUAgCC- -5'
2896 5' -51.6 NC_001493.1 + 56114 0.68 0.962238
Target:  5'- cGGGGuGGUCUCGGaaGGAcgACgcgucaGUCGGg -3'
miRNA:   3'- uCCCCuUCAGAGUC--CCUaaUG------UAGCC- -5'
2896 5' -51.6 NC_001493.1 + 87881 0.69 0.93857
Target:  5'- nGGGGGcAGGUC-CAGGGGUagauccggcuccucgUACGccgCGGg -3'
miRNA:   3'- -UCCCC-UUCAGaGUCCCUA---------------AUGUa--GCC- -5'
2896 5' -51.6 NC_001493.1 + 87839 0.7 0.916856
Target:  5'- gGGGGGuAGGUC-CAGGGGUagauccagcuccucgUACGccgCGGg -3'
miRNA:   3'- -UCCCC-UUCAGaGUCCCUA---------------AUGUa--GCC- -5'
2896 5' -51.6 NC_001493.1 + 18127 0.7 0.901881
Target:  5'- gAGuGGGAGGUCUCGGGGAcc-CGUg-- -3'
miRNA:   3'- -UC-CCCUUCAGAGUCCCUaauGUAgcc -5'
2896 5' -51.6 NC_001493.1 + 133681 0.7 0.901881
Target:  5'- gAGuGGGAGGUCUCGGGGAcc-CGUg-- -3'
miRNA:   3'- -UC-CCCUUCAGAGUCCCUaauGUAgcc -5'
2896 5' -51.6 NC_001493.1 + 30492 0.7 0.901881
Target:  5'- cGGGGcccuGGUCggGGGGAUcGgGUCGGa -3'
miRNA:   3'- uCCCCu---UCAGagUCCCUAaUgUAGCC- -5'
2896 5' -51.6 NC_001493.1 + 123380 0.73 0.77892
Target:  5'- gGGGGGAGGguuaaUCGGGGAgguCAcCGGg -3'
miRNA:   3'- -UCCCCUUCag---AGUCCCUaauGUaGCC- -5'
2896 5' -51.6 NC_001493.1 + 7826 0.73 0.77892
Target:  5'- gGGGGGAGGguuaaUCGGGGAgguCAcCGGg -3'
miRNA:   3'- -UCCCCUUCag---AGUCCCUaauGUaGCC- -5'
2896 5' -51.6 NC_001493.1 + 87234 0.75 0.698662
Target:  5'- -cGGGggGUCcaacgCGGGGGggAUAUCGGa -3'
miRNA:   3'- ucCCCuuCAGa----GUCCCUaaUGUAGCC- -5'
2896 5' -51.6 NC_001493.1 + 28068 0.77 0.583009
Target:  5'- -cGGGGAGUCaCAGGGAggACuAUCGGa -3'
miRNA:   3'- ucCCCUUCAGaGUCCCUaaUG-UAGCC- -5'
2896 5' -51.6 NC_001493.1 + 57994 0.78 0.531269
Target:  5'- aAGGuGGGugGGUCUCgAGGGGUUACAUCa- -3'
miRNA:   3'- -UCC-CCU--UCAGAG-UCCCUAAUGUAGcc -5'
2896 5' -51.6 NC_001493.1 + 20911 1.12 0.004694
Target:  5'- gAGGGGAAGUCUCAGGGAUUACAUCGGa -3'
miRNA:   3'- -UCCCCUUCAGAGUCCCUAAUGUAGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.