miRNA display CGI


Results 1 - 20 of 467 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28960 3' -64.4 NC_006146.1 + 20342 0.66 0.564617
Target:  5'- uGCCCucugaGCCCCCu-UUGCCCCCuGGCa -3'
miRNA:   3'- uCGGGc----UGGGGGucGGCGGGGGuUUG- -5'
28960 3' -64.4 NC_006146.1 + 23420 0.66 0.564617
Target:  5'- uGCCCucugaGCCCCCu-UUGCCCCCuGGCa -3'
miRNA:   3'- uCGGGc----UGGGGGucGGCGGGGGuUUG- -5'
28960 3' -64.4 NC_006146.1 + 120882 0.66 0.564617
Target:  5'- cGCCuCGACCCcggcugcaucaaCCGGaUCGCCUCCGAc- -3'
miRNA:   3'- uCGG-GCUGGG------------GGUC-GGCGGGGGUUug -5'
28960 3' -64.4 NC_006146.1 + 14186 0.66 0.564617
Target:  5'- uGCCCucugaGCCCCCu-UUGCCCCCuGGCa -3'
miRNA:   3'- uCGGGc----UGGGGGucGGCGGGGGuUUG- -5'
28960 3' -64.4 NC_006146.1 + 26498 0.66 0.564617
Target:  5'- uGCCCucugaGCCCCCu-UUGCCCCCuGGCa -3'
miRNA:   3'- uCGGGc----UGGGGGucGGCGGGGGuUUG- -5'
28960 3' -64.4 NC_006146.1 + 38957 0.66 0.564617
Target:  5'- uGGCCuUGGCaUCCgGGUgGgCCCCCAGACu -3'
miRNA:   3'- -UCGG-GCUG-GGGgUCGgC-GGGGGUUUG- -5'
28960 3' -64.4 NC_006146.1 + 92091 0.66 0.564617
Target:  5'- cGGCCCGGCCUggGGCUGCUgCUggGg -3'
miRNA:   3'- -UCGGGCUGGGggUCGGCGGgGGuuUg -5'
28960 3' -64.4 NC_006146.1 + 18997 0.66 0.564617
Target:  5'- gAGCCaGACCCCagugggGGCC-CCCUCGAGu -3'
miRNA:   3'- -UCGGgCUGGGGg-----UCGGcGGGGGUUUg -5'
28960 3' -64.4 NC_006146.1 + 17264 0.66 0.564617
Target:  5'- uGCCCucugaGCCCCCu-UUGCCCCCuGGCa -3'
miRNA:   3'- uCGGGc----UGGGGGucGGCGGGGGuUUG- -5'
28960 3' -64.4 NC_006146.1 + 29576 0.66 0.564617
Target:  5'- uGCCCucugaGCCCCCu-UUGCCCCCuGGCa -3'
miRNA:   3'- uCGGGc----UGGGGGucGGCGGGGGuUUG- -5'
28960 3' -64.4 NC_006146.1 + 25946 0.66 0.564617
Target:  5'- gAGCCCuGGUCCCCAGCaGCCUCUc--- -3'
miRNA:   3'- -UCGGG-CUGGGGGUCGgCGGGGGuuug -5'
28960 3' -64.4 NC_006146.1 + 92002 0.66 0.555115
Target:  5'- gGGCCCGGCCUggGGCUGCUgCUggGg -3'
miRNA:   3'- -UCGGGCUGGGggUCGGCGGgGGuuUg -5'
28960 3' -64.4 NC_006146.1 + 92121 0.66 0.555115
Target:  5'- gGGCCCGGCCUggGGCUGCUgCUggGg -3'
miRNA:   3'- -UCGGGCUGGGggUCGGCGGgGGuuUg -5'
28960 3' -64.4 NC_006146.1 + 92062 0.66 0.555115
Target:  5'- gGGCCCGGCCUggGGCUGCUgCUggGg -3'
miRNA:   3'- -UCGGGCUGGGggUCGGCGGgGGuuUg -5'
28960 3' -64.4 NC_006146.1 + 54974 0.66 0.555115
Target:  5'- cGCuaCCGcuGCCCCCguacccgggguGGCCGgaagcCCCCCGGGCg -3'
miRNA:   3'- uCG--GGC--UGGGGG-----------UCGGC-----GGGGGUUUG- -5'
28960 3' -64.4 NC_006146.1 + 92032 0.66 0.555115
Target:  5'- gGGCCCGGCCUggGGCUGCUgCUggGg -3'
miRNA:   3'- -UCGGGCUGGGggUCGGCGGgGGuuUg -5'
28960 3' -64.4 NC_006146.1 + 57232 0.66 0.555115
Target:  5'- gGGCCCGGgCCCgAGCCaCCuCUCGucGACc -3'
miRNA:   3'- -UCGGGCUgGGGgUCGGcGG-GGGU--UUG- -5'
28960 3' -64.4 NC_006146.1 + 75815 0.66 0.555115
Target:  5'- aGGCCCaGguuccagcaACCCCaccaCAGCUGCCCCaCGAGu -3'
miRNA:   3'- -UCGGG-C---------UGGGG----GUCGGCGGGG-GUUUg -5'
28960 3' -64.4 NC_006146.1 + 129050 0.66 0.555115
Target:  5'- gAGCUgGGCCCagacgCCGGCgcagacaGCCCCCGcGACa -3'
miRNA:   3'- -UCGGgCUGGG-----GGUCGg------CGGGGGU-UUG- -5'
28960 3' -64.4 NC_006146.1 + 52135 0.66 0.555115
Target:  5'- cAGCUCGGgCCCCaccaggucgaAGCCGCUgCCGuuGGCc -3'
miRNA:   3'- -UCGGGCUgGGGG----------UCGGCGGgGGU--UUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.