miRNA display CGI


Results 1 - 20 of 467 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28960 3' -64.4 NC_006146.1 + 29697 0.66 0.536258
Target:  5'- uGCCCaGuucCCCCCAGgaGCCCCUGGu- -3'
miRNA:   3'- uCGGG-Cu--GGGGGUCggCGGGGGUUug -5'
28960 3' -64.4 NC_006146.1 + 42482 0.66 0.536258
Target:  5'- cGGCCCGGaucacccuCCCCUGGCCGUguucugCCUGGACu -3'
miRNA:   3'- -UCGGGCU--------GGGGGUCGGCGg-----GGGUUUG- -5'
28960 3' -64.4 NC_006146.1 + 4916 0.66 0.517629
Target:  5'- gAGCCgGACCCUCgcugucggguGGCCGUgcucugugCCCCGGGg -3'
miRNA:   3'- -UCGGgCUGGGGG----------UCGGCG--------GGGGUUUg -5'
28960 3' -64.4 NC_006146.1 + 69068 0.66 0.526913
Target:  5'- cAGCCCGAgCgCUCgGGCC-CCgCCGAACu -3'
miRNA:   3'- -UCGGGCU-G-GGGgUCGGcGGgGGUUUG- -5'
28960 3' -64.4 NC_006146.1 + 15017 0.66 0.526913
Target:  5'- aAGCCaccgGACCuUCCAgGCCcggGCCCCCAGGu -3'
miRNA:   3'- -UCGGg---CUGG-GGGU-CGG---CGGGGGUUUg -5'
28960 3' -64.4 NC_006146.1 + 3825 0.66 0.526913
Target:  5'- aGGCCaggcggGGCaCCCCcGCUGCCCuaCCGGACc -3'
miRNA:   3'- -UCGGg-----CUG-GGGGuCGGCGGG--GGUUUG- -5'
28960 3' -64.4 NC_006146.1 + 27329 0.66 0.526913
Target:  5'- aAGCCaccgGACCuUCCAgGCCcggGCCCCCAGGu -3'
miRNA:   3'- -UCGGg---CUGG-GGGU-CGG---CGGGGGUUUg -5'
28960 3' -64.4 NC_006146.1 + 94163 0.66 0.516704
Target:  5'- uGCCCGuggGCCUCCAcgaagcuGUCGgCCUCGAGCg -3'
miRNA:   3'- uCGGGC---UGGGGGU-------CGGCgGGGGUUUG- -5'
28960 3' -64.4 NC_006146.1 + 75904 0.66 0.517629
Target:  5'- cAGCaCC--UCCUCAGCUGCCCCCcauGCc -3'
miRNA:   3'- -UCG-GGcuGGGGGUCGGCGGGGGuu-UG- -5'
28960 3' -64.4 NC_006146.1 + 19951 0.66 0.536258
Target:  5'- cGCCUccCUCCCGGCC-CCCCUcAGCu -3'
miRNA:   3'- uCGGGcuGGGGGUCGGcGGGGGuUUG- -5'
28960 3' -64.4 NC_006146.1 + 21173 0.66 0.526913
Target:  5'- aAGCCaccgGACCuUCCAgGCCcggGCCCCCAGGu -3'
miRNA:   3'- -UCGGg---CUGG-GGGU-CGG---CGGGGGUUUg -5'
28960 3' -64.4 NC_006146.1 + 52893 0.66 0.536258
Target:  5'- cGGcCCCGAgCCCCGcauggucugcGUgGCCCCCcggGGGCg -3'
miRNA:   3'- -UC-GGGCUgGGGGU----------CGgCGGGGG---UUUG- -5'
28960 3' -64.4 NC_006146.1 + 18095 0.66 0.526913
Target:  5'- aAGCCaccgGACCuUCCAgGCCcggGCCCCCAGGu -3'
miRNA:   3'- -UCGGg---CUGG-GGGU-CGG---CGGGGGUUUg -5'
28960 3' -64.4 NC_006146.1 + 53327 0.66 0.526913
Target:  5'- gAGCCCGAggaggCCCGGCgGCCgCgGGGCg -3'
miRNA:   3'- -UCGGGCUgg---GGGUCGgCGGgGgUUUG- -5'
28960 3' -64.4 NC_006146.1 + 112653 0.66 0.526913
Target:  5'- aGGCCaccgGGCCCCUuuuauAGCCcuuguccacGCCCCCGGuguGCg -3'
miRNA:   3'- -UCGGg---CUGGGGG-----UCGG---------CGGGGGUU---UG- -5'
28960 3' -64.4 NC_006146.1 + 24251 0.66 0.526913
Target:  5'- aAGCCaccgGACCuUCCAgGCCcggGCCCCCAGGu -3'
miRNA:   3'- -UCGGg---CUGG-GGGU-CGG---CGGGGGUUUg -5'
28960 3' -64.4 NC_006146.1 + 137694 0.66 0.536258
Target:  5'- -uCCCGGCUCCCccuccGGCCucCCCCCGGGg -3'
miRNA:   3'- ucGGGCUGGGGG-----UCGGc-GGGGGUUUg -5'
28960 3' -64.4 NC_006146.1 + 127252 0.66 0.526913
Target:  5'- gAGCCgGGCCCCUcuccccaggcGGCCacGCCCCg---- -3'
miRNA:   3'- -UCGGgCUGGGGG----------UCGG--CGGGGguuug -5'
28960 3' -64.4 NC_006146.1 + 160228 0.66 0.526913
Target:  5'- uGCCCGcggguaucGCCCCgGGCC-UCCCCGu-- -3'
miRNA:   3'- uCGGGC--------UGGGGgUCGGcGGGGGUuug -5'
28960 3' -64.4 NC_006146.1 + 157814 0.66 0.517629
Target:  5'- aGGUCCGAguacuCCUCCGcGCUGgCCCCGGAg -3'
miRNA:   3'- -UCGGGCU-----GGGGGU-CGGCgGGGGUUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.